Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1829 and Dshi_1830 are separated by 27 nucleotides Dshi_1830 and Dshi_1831 are separated by 24 nucleotides Dshi_1831 and Dshi_1832 are separated by 24 nucleotides Dshi_1832 and Dshi_1833 overlap by 1 nucleotides Dshi_1833 and Dshi_1834 are separated by 63 nucleotides
Dshi_1829: Dshi_1829 - FAD dependent oxidoreductase (RefSeq), at 1,909,208 to 1,910,602
_1829
Dshi_1830: Dshi_1830 - protein of unknown function DUF1486 (RefSeq), at 1,910,630 to 1,911,016
_1830
Dshi_1831: Dshi_1831 - UspA domain protein (RefSeq), at 1,911,041 to 1,911,544
_1831
Dshi_1832: Dshi_1832 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,911,569 to 1,912,909
_1832
Dshi_1833: Dshi_1833 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 1,912,909 to 1,913,475
_1833
Dshi_1834: Dshi_1834 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,913,539 to 1,914,555
_1834
Position (kb)
1911
1912
1913 Strain fitness (log2 ratio)
-1
0
1 at 1910.584 kb on + strand at 1910.584 kb on + strand at 1910.703 kb on - strand, within Dshi_1830 at 1910.712 kb on - strand, within Dshi_1830 at 1910.726 kb on - strand, within Dshi_1830 at 1910.756 kb on + strand, within Dshi_1830 at 1910.759 kb on - strand, within Dshi_1830 at 1910.836 kb on - strand, within Dshi_1830 at 1910.907 kb on + strand, within Dshi_1830 at 1910.915 kb on - strand, within Dshi_1830 at 1910.917 kb on - strand, within Dshi_1830 at 1910.970 kb on - strand, within Dshi_1830 at 1910.987 kb on - strand at 1910.997 kb on - strand at 1911.210 kb on - strand, within Dshi_1831 at 1911.439 kb on + strand, within Dshi_1831 at 1911.447 kb on - strand, within Dshi_1831 at 1911.520 kb on + strand at 1911.520 kb on + strand at 1911.520 kb on + strand at 1911.520 kb on + strand at 1911.520 kb on + strand at 1911.521 kb on + strand at 1911.528 kb on - strand at 1911.528 kb on - strand at 1911.528 kb on - strand at 1911.566 kb on + strand at 1911.586 kb on + strand at 1911.611 kb on + strand at 1911.684 kb on + strand at 1911.690 kb on - strand at 1911.962 kb on - strand, within Dshi_1832 at 1912.068 kb on - strand, within Dshi_1832 at 1912.068 kb on - strand, within Dshi_1832 at 1912.094 kb on + strand, within Dshi_1832 at 1912.095 kb on + strand, within Dshi_1832 at 1912.231 kb on - strand, within Dshi_1832 at 1912.279 kb on + strand, within Dshi_1832 at 1912.370 kb on - strand, within Dshi_1832 at 1912.370 kb on - strand, within Dshi_1832 at 1912.463 kb on + strand, within Dshi_1832 at 1912.612 kb on - strand, within Dshi_1832 at 1912.652 kb on + strand, within Dshi_1832 at 1912.657 kb on + strand, within Dshi_1832 at 1912.700 kb on - strand, within Dshi_1832 at 1912.792 kb on + strand at 1912.839 kb on - strand at 1913.081 kb on + strand, within Dshi_1833 at 1913.110 kb on + strand, within Dshi_1833 at 1913.113 kb on - strand, within Dshi_1833 at 1913.129 kb on - strand, within Dshi_1833 at 1913.167 kb on + strand, within Dshi_1833 at 1913.189 kb on + strand, within Dshi_1833 at 1913.251 kb on - strand, within Dshi_1833 at 1913.286 kb on - strand, within Dshi_1833 at 1913.370 kb on - strand, within Dshi_1833 at 1913.380 kb on - strand, within Dshi_1833 at 1913.476 kb on + strand at 1913.485 kb on + strand at 1913.577 kb on - strand at 1913.639 kb on - strand at 1913.736 kb on + strand, within Dshi_1834 at 1913.875 kb on + strand, within Dshi_1834 at 1913.875 kb on + strand, within Dshi_1834 at 1913.880 kb on - strand, within Dshi_1834
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,910,584 + -0.5 1,910,584 + -0.1 1,910,703 - Dshi_1830 0.19 -1.7 1,910,712 - Dshi_1830 0.21 -1.2 1,910,726 - Dshi_1830 0.25 -0.6 1,910,756 + Dshi_1830 0.33 -0.2 1,910,759 - Dshi_1830 0.33 +0.4 1,910,836 - Dshi_1830 0.53 -0.4 1,910,907 + Dshi_1830 0.72 -0.1 1,910,915 - Dshi_1830 0.74 -0.5 1,910,917 - Dshi_1830 0.74 -0.4 1,910,970 - Dshi_1830 0.88 -0.5 1,910,987 - -0.8 1,910,997 - -0.4 1,911,210 - Dshi_1831 0.34 -1.1 1,911,439 + Dshi_1831 0.79 -1.4 1,911,447 - Dshi_1831 0.81 +0.5 1,911,520 + -1.0 1,911,520 + -0.7 1,911,520 + -1.6 1,911,520 + +0.8 1,911,520 + -0.2 1,911,521 + -1.2 1,911,528 - -0.8 1,911,528 - +0.3 1,911,528 - -1.3 1,911,566 + +0.6 1,911,586 + -0.5 1,911,611 + -1.3 1,911,684 + -1.3 1,911,690 - -0.9 1,911,962 - Dshi_1832 0.29 -0.3 1,912,068 - Dshi_1832 0.37 -0.1 1,912,068 - Dshi_1832 0.37 -1.7 1,912,094 + Dshi_1832 0.39 -0.7 1,912,095 + Dshi_1832 0.39 -0.5 1,912,231 - Dshi_1832 0.49 -0.3 1,912,279 + Dshi_1832 0.53 +0.5 1,912,370 - Dshi_1832 0.60 -0.3 1,912,370 - Dshi_1832 0.60 -0.2 1,912,463 + Dshi_1832 0.67 -0.6 1,912,612 - Dshi_1832 0.78 -0.9 1,912,652 + Dshi_1832 0.81 -1.4 1,912,657 + Dshi_1832 0.81 +0.2 1,912,700 - Dshi_1832 0.84 -1.3 1,912,792 + -0.4 1,912,839 - -1.0 1,913,081 + Dshi_1833 0.30 -0.9 1,913,110 + Dshi_1833 0.35 -1.6 1,913,113 - Dshi_1833 0.36 -0.2 1,913,129 - Dshi_1833 0.39 +0.0 1,913,167 + Dshi_1833 0.46 -1.0 1,913,189 + Dshi_1833 0.49 +0.7 1,913,251 - Dshi_1833 0.60 -0.3 1,913,286 - Dshi_1833 0.66 +1.0 1,913,370 - Dshi_1833 0.81 -0.2 1,913,380 - Dshi_1833 0.83 -0.0 1,913,476 + -0.1 1,913,485 + -0.6 1,913,577 - -0.3 1,913,639 - -1.3 1,913,736 + Dshi_1834 0.19 -0.8 1,913,875 + Dshi_1834 0.33 -0.4 1,913,875 + Dshi_1834 0.33 -0.8 1,913,880 - Dshi_1834 0.34 -0.6
Or see this region's nucleotide sequence