Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1832

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1829 and Dshi_1830 are separated by 27 nucleotidesDshi_1830 and Dshi_1831 are separated by 24 nucleotidesDshi_1831 and Dshi_1832 are separated by 24 nucleotidesDshi_1832 and Dshi_1833 overlap by 1 nucleotidesDshi_1833 and Dshi_1834 are separated by 63 nucleotides Dshi_1829: Dshi_1829 - FAD dependent oxidoreductase (RefSeq), at 1,909,208 to 1,910,602 _1829 Dshi_1830: Dshi_1830 - protein of unknown function DUF1486 (RefSeq), at 1,910,630 to 1,911,016 _1830 Dshi_1831: Dshi_1831 - UspA domain protein (RefSeq), at 1,911,041 to 1,911,544 _1831 Dshi_1832: Dshi_1832 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,911,569 to 1,912,909 _1832 Dshi_1833: Dshi_1833 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 1,912,909 to 1,913,475 _1833 Dshi_1834: Dshi_1834 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,913,539 to 1,914,555 _1834 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -1 0 1at 1910.584 kb on + strandat 1910.584 kb on + strandat 1910.703 kb on - strand, within Dshi_1830at 1910.712 kb on - strand, within Dshi_1830at 1910.726 kb on - strand, within Dshi_1830at 1910.756 kb on + strand, within Dshi_1830at 1910.759 kb on - strand, within Dshi_1830at 1910.836 kb on - strand, within Dshi_1830at 1910.907 kb on + strand, within Dshi_1830at 1910.915 kb on - strand, within Dshi_1830at 1910.917 kb on - strand, within Dshi_1830at 1910.970 kb on - strand, within Dshi_1830at 1910.987 kb on - strandat 1910.997 kb on - strandat 1911.210 kb on - strand, within Dshi_1831at 1911.439 kb on + strand, within Dshi_1831at 1911.447 kb on - strand, within Dshi_1831at 1911.520 kb on + strandat 1911.520 kb on + strandat 1911.520 kb on + strandat 1911.520 kb on + strandat 1911.520 kb on + strandat 1911.521 kb on + strandat 1911.528 kb on - strandat 1911.528 kb on - strandat 1911.528 kb on - strandat 1911.566 kb on + strandat 1911.586 kb on + strandat 1911.611 kb on + strandat 1911.684 kb on + strandat 1911.690 kb on - strandat 1911.962 kb on - strand, within Dshi_1832at 1912.068 kb on - strand, within Dshi_1832at 1912.068 kb on - strand, within Dshi_1832at 1912.094 kb on + strand, within Dshi_1832at 1912.095 kb on + strand, within Dshi_1832at 1912.231 kb on - strand, within Dshi_1832at 1912.279 kb on + strand, within Dshi_1832at 1912.370 kb on - strand, within Dshi_1832at 1912.370 kb on - strand, within Dshi_1832at 1912.463 kb on + strand, within Dshi_1832at 1912.612 kb on - strand, within Dshi_1832at 1912.652 kb on + strand, within Dshi_1832at 1912.657 kb on + strand, within Dshi_1832at 1912.700 kb on - strand, within Dshi_1832at 1912.792 kb on + strandat 1912.839 kb on - strandat 1913.081 kb on + strand, within Dshi_1833at 1913.110 kb on + strand, within Dshi_1833at 1913.113 kb on - strand, within Dshi_1833at 1913.129 kb on - strand, within Dshi_1833at 1913.167 kb on + strand, within Dshi_1833at 1913.189 kb on + strand, within Dshi_1833at 1913.251 kb on - strand, within Dshi_1833at 1913.286 kb on - strand, within Dshi_1833at 1913.370 kb on - strand, within Dshi_1833at 1913.380 kb on - strand, within Dshi_1833at 1913.476 kb on + strandat 1913.485 kb on + strandat 1913.577 kb on - strandat 1913.639 kb on - strandat 1913.736 kb on + strand, within Dshi_1834at 1913.875 kb on + strand, within Dshi_1834at 1913.875 kb on + strand, within Dshi_1834at 1913.880 kb on - strand, within Dshi_1834

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,910,584 + -0.5
1,910,584 + -0.1
1,910,703 - Dshi_1830 0.19 -1.7
1,910,712 - Dshi_1830 0.21 -1.2
1,910,726 - Dshi_1830 0.25 -0.6
1,910,756 + Dshi_1830 0.33 -0.2
1,910,759 - Dshi_1830 0.33 +0.4
1,910,836 - Dshi_1830 0.53 -0.4
1,910,907 + Dshi_1830 0.72 -0.1
1,910,915 - Dshi_1830 0.74 -0.5
1,910,917 - Dshi_1830 0.74 -0.4
1,910,970 - Dshi_1830 0.88 -0.5
1,910,987 - -0.8
1,910,997 - -0.4
1,911,210 - Dshi_1831 0.34 -1.1
1,911,439 + Dshi_1831 0.79 -1.4
1,911,447 - Dshi_1831 0.81 +0.5
1,911,520 + -1.0
1,911,520 + -0.7
1,911,520 + -1.6
1,911,520 + +0.8
1,911,520 + -0.2
1,911,521 + -1.2
1,911,528 - -0.8
1,911,528 - +0.3
1,911,528 - -1.3
1,911,566 + +0.6
1,911,586 + -0.5
1,911,611 + -1.3
1,911,684 + -1.3
1,911,690 - -0.9
1,911,962 - Dshi_1832 0.29 -0.3
1,912,068 - Dshi_1832 0.37 -0.1
1,912,068 - Dshi_1832 0.37 -1.7
1,912,094 + Dshi_1832 0.39 -0.7
1,912,095 + Dshi_1832 0.39 -0.5
1,912,231 - Dshi_1832 0.49 -0.3
1,912,279 + Dshi_1832 0.53 +0.5
1,912,370 - Dshi_1832 0.60 -0.3
1,912,370 - Dshi_1832 0.60 -0.2
1,912,463 + Dshi_1832 0.67 -0.6
1,912,612 - Dshi_1832 0.78 -0.9
1,912,652 + Dshi_1832 0.81 -1.4
1,912,657 + Dshi_1832 0.81 +0.2
1,912,700 - Dshi_1832 0.84 -1.3
1,912,792 + -0.4
1,912,839 - -1.0
1,913,081 + Dshi_1833 0.30 -0.9
1,913,110 + Dshi_1833 0.35 -1.6
1,913,113 - Dshi_1833 0.36 -0.2
1,913,129 - Dshi_1833 0.39 +0.0
1,913,167 + Dshi_1833 0.46 -1.0
1,913,189 + Dshi_1833 0.49 +0.7
1,913,251 - Dshi_1833 0.60 -0.3
1,913,286 - Dshi_1833 0.66 +1.0
1,913,370 - Dshi_1833 0.81 -0.2
1,913,380 - Dshi_1833 0.83 -0.0
1,913,476 + -0.1
1,913,485 + -0.6
1,913,577 - -0.3
1,913,639 - -1.3
1,913,736 + Dshi_1834 0.19 -0.8
1,913,875 + Dshi_1834 0.33 -0.4
1,913,875 + Dshi_1834 0.33 -0.8
1,913,880 - Dshi_1834 0.34 -0.6

Or see this region's nucleotide sequence