Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1811
Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Thallium(I) acetate 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,886,586 | + | Dshi_1810 | 0.22 | +0.3 | |
1,886,698 | + | Dshi_1810 | 0.32 | +1.2 | |
1,886,706 | - | Dshi_1810 | 0.33 | -0.1 | |
1,886,911 | + | Dshi_1810 | 0.50 | -0.3 | |
1,886,993 | - | Dshi_1810 | 0.57 | +0.8 | |
1,887,056 | - | Dshi_1810 | 0.62 | +0.4 | |
1,887,108 | + | Dshi_1810 | 0.67 | -1.2 | |
1,887,347 | + | Dshi_1810 | 0.87 | +0.2 | |
1,887,355 | - | Dshi_1810 | 0.88 | +1.2 | |
1,887,645 | - | +0.5 | |||
1,887,653 | - | -0.3 | |||
1,887,691 | - | -1.0 | |||
1,887,703 | - | Dshi_1811 | 0.10 | -0.5 | |
1,887,843 | - | Dshi_1811 | 0.20 | -0.4 | |
1,887,917 | + | Dshi_1811 | 0.25 | -0.5 | |
1,888,412 | + | Dshi_1811 | 0.61 | +0.1 | |
1,888,916 | + | +0.2 | |||
1,888,921 | + | +2.1 | |||
1,889,047 | + | -0.7 | |||
1,889,111 | - | Dshi_1812 | 0.15 | +1.0 | |
1,889,119 | - | Dshi_1812 | 0.16 | +0.3 | |
1,889,438 | - | Dshi_1812 | 0.70 | +0.3 | |
1,889,540 | - | Dshi_1812 | 0.87 | +0.8 | |
1,889,600 | + | +0.4 | |||
1,889,622 | - | +0.1 | |||
1,889,892 | - | Dshi_1813 | 0.16 | +0.2 | |
1,889,925 | + | Dshi_1813 | 0.18 | +0.3 |
Or see this region's nucleotide sequence