Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1766 and Dshi_1767 are separated by 150 nucleotides Dshi_1767 and Dshi_1768 are separated by 181 nucleotides Dshi_1768 and Dshi_1769 are separated by 11 nucleotides
Dshi_1766: Dshi_1766 - peptidoglycan-binding LysM (RefSeq), at 1,832,580 to 1,834,175
_1766
Dshi_1767: Dshi_1767 - hypothetical protein (RefSeq), at 1,834,326 to 1,834,865
_1767
Dshi_1768: Dshi_1768 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq), at 1,835,047 to 1,835,688
_1768
Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505
_1769
Position (kb)
1834
1835 Strain fitness (log2 ratio)
-2
-1
0
1 at 1833.433 kb on - strand, within Dshi_1766 at 1834.343 kb on + strand at 1834.444 kb on + strand, within Dshi_1767 at 1834.457 kb on - strand, within Dshi_1767 at 1834.574 kb on + strand, within Dshi_1767 at 1834.643 kb on - strand, within Dshi_1767 at 1834.674 kb on + strand, within Dshi_1767 at 1834.847 kb on - strand at 1834.947 kb on - strand at 1834.947 kb on - strand at 1834.963 kb on + strand at 1834.995 kb on + strand at 1835.037 kb on - strand at 1835.585 kb on + strand, within Dshi_1768
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,833,433 - Dshi_1766 0.53 +0.3 1,834,343 + -1.0 1,834,444 + Dshi_1767 0.22 -1.0 1,834,457 - Dshi_1767 0.24 -0.6 1,834,574 + Dshi_1767 0.46 -0.1 1,834,643 - Dshi_1767 0.59 -0.1 1,834,674 + Dshi_1767 0.64 -1.2 1,834,847 - -0.9 1,834,947 - -0.0 1,834,947 - -1.0 1,834,963 + -0.8 1,834,995 + +0.2 1,835,037 - -0.5 1,835,585 + Dshi_1768 0.84 -2.2
Or see this region's nucleotide sequence