Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1743

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1742 and Dshi_1743 are separated by 3 nucleotidesDshi_1743 and Dshi_1744 are separated by 331 nucleotidesDshi_1744 and Dshi_1745 are separated by 88 nucleotides Dshi_1742: Dshi_1742 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,808,288 to 1,809,310 _1742 Dshi_1743: Dshi_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,809,314 to 1,809,916 _1743 Dshi_1744: Dshi_1744 - pantetheine-phosphate adenylyltransferase (RefSeq), at 1,810,248 to 1,810,763 _1744 Dshi_1745: Dshi_1745 - putative signal-transduction protein with CBS domains (RefSeq), at 1,810,852 to 1,811,286 _1745 Position (kb) 1809 1810Strain fitness (log2 ratio) -1 0 1at 1809.540 kb on - strand, within Dshi_1743at 1809.543 kb on + strand, within Dshi_1743at 1809.622 kb on - strand, within Dshi_1743at 1809.800 kb on - strand, within Dshi_1743at 1809.948 kb on + strandat 1810.822 kb on + strandat 1810.827 kb on + strandat 1810.830 kb on - strandat 1810.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,809,540 - Dshi_1743 0.37 +0.9
1,809,543 + Dshi_1743 0.38 +0.4
1,809,622 - Dshi_1743 0.51 +0.7
1,809,800 - Dshi_1743 0.81 +0.8
1,809,948 + +0.7
1,810,822 + -0.1
1,810,827 + +0.0
1,810,830 - -0.1
1,810,841 - +1.6

Or see this region's nucleotide sequence