Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1694

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1693 and Dshi_1694 are separated by 61 nucleotidesDshi_1694 and Dshi_1695 are separated by 69 nucleotidesDshi_1695 and Dshi_1696 overlap by 4 nucleotides Dshi_1693: Dshi_1693 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,761,472 to 1,762,767 _1693 Dshi_1694: Dshi_1694 - major facilitator superfamily MFS_1 (RefSeq), at 1,762,829 to 1,764,055 _1694 Dshi_1695: Dshi_1695 - hypothetical protein (RefSeq), at 1,764,125 to 1,764,895 _1695 Dshi_1696: Dshi_1696 - 2-isopropylmalate synthase/homocitrate synthase family protein (RefSeq), at 1,764,892 to 1,766,529 _1696 Position (kb) 1762 1763 1764 1765Strain fitness (log2 ratio) -1 0 1at 1763.205 kb on - strand, within Dshi_1694at 1763.302 kb on - strand, within Dshi_1694at 1763.302 kb on - strand, within Dshi_1694at 1763.312 kb on - strand, within Dshi_1694at 1763.333 kb on - strand, within Dshi_1694at 1763.427 kb on - strand, within Dshi_1694at 1763.454 kb on - strand, within Dshi_1694at 1763.684 kb on - strand, within Dshi_1694at 1763.820 kb on - strand, within Dshi_1694at 1763.837 kb on - strand, within Dshi_1694at 1763.867 kb on + strand, within Dshi_1694at 1763.937 kb on + strandat 1764.019 kb on + strandat 1765.044 kb on + strandat 1765.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,763,205 - Dshi_1694 0.31 +1.6
1,763,302 - Dshi_1694 0.39 +1.2
1,763,302 - Dshi_1694 0.39 +0.4
1,763,312 - Dshi_1694 0.39 -1.7
1,763,333 - Dshi_1694 0.41 -0.8
1,763,427 - Dshi_1694 0.49 +1.2
1,763,454 - Dshi_1694 0.51 +0.7
1,763,684 - Dshi_1694 0.70 +0.4
1,763,820 - Dshi_1694 0.81 +0.3
1,763,837 - Dshi_1694 0.82 +0.7
1,763,867 + Dshi_1694 0.85 +0.7
1,763,937 + +1.5
1,764,019 + +0.8
1,765,044 + +0.8
1,765,044 + +1.2

Or see this region's nucleotide sequence