Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1691

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1689 and Dshi_1690 overlap by 19 nucleotidesDshi_1690 and Dshi_1691 overlap by 4 nucleotidesDshi_1691 and Dshi_1692 are separated by 97 nucleotidesDshi_1692 and Dshi_1693 overlap by 4 nucleotides Dshi_1689: Dshi_1689 - HhH-GPD family protein (RefSeq), at 1,758,126 to 1,758,758 _1689 Dshi_1690: Dshi_1690 - precorrin-6x reductase (RefSeq), at 1,758,740 to 1,759,486 _1690 Dshi_1691: Dshi_1691 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,759,483 to 1,760,532 _1691 Dshi_1692: Dshi_1692 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,760,630 to 1,761,475 _1692 Dshi_1693: Dshi_1693 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,761,472 to 1,762,767 _1693 Position (kb) 1759 1760 1761Strain fitness (log2 ratio) -2 -1 0 1at 1758.487 kb on - strand, within Dshi_1689at 1758.489 kb on + strand, within Dshi_1689at 1758.532 kb on + strand, within Dshi_1689at 1758.625 kb on - strand, within Dshi_1689at 1758.625 kb on - strand, within Dshi_1689at 1758.696 kb on + strandat 1758.731 kb on - strandat 1758.773 kb on - strandat 1758.776 kb on + strandat 1758.776 kb on + strandat 1760.580 kb on - strandat 1760.901 kb on - strand, within Dshi_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,758,487 - Dshi_1689 0.57 +0.6
1,758,489 + Dshi_1689 0.57 -0.0
1,758,532 + Dshi_1689 0.64 -0.1
1,758,625 - Dshi_1689 0.79 +1.0
1,758,625 - Dshi_1689 0.79 -0.3
1,758,696 + -0.6
1,758,731 - -0.7
1,758,773 - -2.4
1,758,776 + +0.6
1,758,776 + -0.2
1,760,580 - -1.0
1,760,901 - Dshi_1692 0.32 -1.3

Or see this region's nucleotide sequence