Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1689 and Dshi_1690 overlap by 19 nucleotides Dshi_1690 and Dshi_1691 overlap by 4 nucleotides Dshi_1691 and Dshi_1692 are separated by 97 nucleotides Dshi_1692 and Dshi_1693 overlap by 4 nucleotides
Dshi_1689: Dshi_1689 - HhH-GPD family protein (RefSeq), at 1,758,126 to 1,758,758
_1689
Dshi_1690: Dshi_1690 - precorrin-6x reductase (RefSeq), at 1,758,740 to 1,759,486
_1690
Dshi_1691: Dshi_1691 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,759,483 to 1,760,532
_1691
Dshi_1692: Dshi_1692 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,760,630 to 1,761,475
_1692
Dshi_1693: Dshi_1693 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,761,472 to 1,762,767
_1693
Position (kb)
1759
1760
1761 Strain fitness (log2 ratio)
-2
-1
0
1 at 1758.487 kb on - strand, within Dshi_1689 at 1758.489 kb on + strand, within Dshi_1689 at 1758.532 kb on + strand, within Dshi_1689 at 1758.625 kb on - strand, within Dshi_1689 at 1758.625 kb on - strand, within Dshi_1689 at 1758.696 kb on + strand at 1758.731 kb on - strand at 1758.773 kb on - strand at 1758.776 kb on + strand at 1758.776 kb on + strand at 1760.580 kb on - strand at 1760.901 kb on - strand, within Dshi_1692
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,758,487 - Dshi_1689 0.57 +0.6 1,758,489 + Dshi_1689 0.57 -0.0 1,758,532 + Dshi_1689 0.64 -0.1 1,758,625 - Dshi_1689 0.79 +1.0 1,758,625 - Dshi_1689 0.79 -0.3 1,758,696 + -0.6 1,758,731 - -0.7 1,758,773 - -2.4 1,758,776 + +0.6 1,758,776 + -0.2 1,760,580 - -1.0 1,760,901 - Dshi_1692 0.32 -1.3
Or see this region's nucleotide sequence