Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1672

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1671 and Dshi_1672 are separated by 43 nucleotidesDshi_1672 and Dshi_1673 overlap by 29 nucleotides Dshi_1671: Dshi_1671 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,739,910 to 1,741,304 _1671 Dshi_1672: Dshi_1672 - ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq), at 1,741,348 to 1,742,121 _1672 Dshi_1673: Dshi_1673 - Ppx/GppA phosphatase (RefSeq), at 1,742,093 to 1,743,274 _1673 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -2 -1 0 1at 1740.463 kb on + strand, within Dshi_1671at 1740.572 kb on + strand, within Dshi_1671at 1740.582 kb on + strand, within Dshi_1671at 1740.662 kb on + strand, within Dshi_1671at 1740.752 kb on - strand, within Dshi_1671at 1740.824 kb on + strand, within Dshi_1671at 1740.828 kb on + strand, within Dshi_1671at 1740.828 kb on + strand, within Dshi_1671at 1740.947 kb on - strand, within Dshi_1671at 1741.017 kb on - strand, within Dshi_1671at 1741.101 kb on + strand, within Dshi_1671at 1741.109 kb on - strand, within Dshi_1671at 1741.241 kb on - strandat 1741.241 kb on - strandat 1741.283 kb on - strandat 1742.144 kb on - strandat 1742.304 kb on + strand, within Dshi_1673at 1742.326 kb on + strand, within Dshi_1673at 1742.377 kb on + strand, within Dshi_1673at 1742.421 kb on + strand, within Dshi_1673at 1742.782 kb on - strand, within Dshi_1673at 1742.925 kb on + strand, within Dshi_1673at 1743.009 kb on - strand, within Dshi_1673at 1743.063 kb on + strand, within Dshi_1673at 1743.063 kb on + strand, within Dshi_1673at 1743.071 kb on - strand, within Dshi_1673at 1743.071 kb on - strand, within Dshi_1673at 1743.071 kb on - strand, within Dshi_1673at 1743.071 kb on - strand, within Dshi_1673

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,740,463 + Dshi_1671 0.40 -1.0
1,740,572 + Dshi_1671 0.47 -0.2
1,740,582 + Dshi_1671 0.48 -0.6
1,740,662 + Dshi_1671 0.54 -0.0
1,740,752 - Dshi_1671 0.60 +0.0
1,740,824 + Dshi_1671 0.66 +1.0
1,740,828 + Dshi_1671 0.66 -1.2
1,740,828 + Dshi_1671 0.66 +0.2
1,740,947 - Dshi_1671 0.74 +0.8
1,741,017 - Dshi_1671 0.79 +0.2
1,741,101 + Dshi_1671 0.85 +0.2
1,741,109 - Dshi_1671 0.86 -0.3
1,741,241 - +0.2
1,741,241 - -0.8
1,741,283 - +0.5
1,742,144 - -2.5
1,742,304 + Dshi_1673 0.18 -1.5
1,742,326 + Dshi_1673 0.20 -2.0
1,742,377 + Dshi_1673 0.24 -1.5
1,742,421 + Dshi_1673 0.28 -1.2
1,742,782 - Dshi_1673 0.58 -0.5
1,742,925 + Dshi_1673 0.70 -0.7
1,743,009 - Dshi_1673 0.77 -1.5
1,743,063 + Dshi_1673 0.82 -1.2
1,743,063 + Dshi_1673 0.82 -1.2
1,743,071 - Dshi_1673 0.83 -1.9
1,743,071 - Dshi_1673 0.83 -1.7
1,743,071 - Dshi_1673 0.83 -2.5
1,743,071 - Dshi_1673 0.83 -1.2

Or see this region's nucleotide sequence