Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1623

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1622 and Dshi_R0029 are separated by 280 nucleotidesDshi_R0029 and Dshi_1623 are separated by 159 nucleotidesDshi_1623 and Dshi_1624 are separated by 0 nucleotidesDshi_1624 and Dshi_1625 are separated by 29 nucleotides Dshi_1622: Dshi_1622 - hypothetical protein (RefSeq), at 1,686,892 to 1,688,406 _1622 Dshi_R0029: Dshi_R0029 - tRNA-Arg (RefSeq), at 1,688,687 to 1,688,763 _R0029 Dshi_1623: Dshi_1623 - cysteine desulfurase, SufS subfamily (RefSeq), at 1,688,923 to 1,690,143 _1623 Dshi_1624: Dshi_1624 - hypothetical protein (RefSeq), at 1,690,144 to 1,690,743 _1624 Dshi_1625: Dshi_1625 - hypothetical protein (RefSeq), at 1,690,773 to 1,691,270 _1625 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -3 -2 -1 0 1at 1688.042 kb on - strand, within Dshi_1622at 1688.043 kb on - strand, within Dshi_1622at 1688.048 kb on - strand, within Dshi_1622at 1688.093 kb on + strand, within Dshi_1622at 1688.093 kb on + strand, within Dshi_1622at 1688.189 kb on - strand, within Dshi_1622at 1688.343 kb on - strandat 1688.449 kb on - strandat 1688.471 kb on - strandat 1688.481 kb on + strandat 1688.499 kb on - strandat 1688.530 kb on + strandat 1688.620 kb on - strandat 1688.659 kb on - strandat 1688.815 kb on + strandat 1688.823 kb on - strandat 1688.923 kb on - strandat 1688.923 kb on - strandat 1690.678 kb on - strand, within Dshi_1624at 1690.750 kb on + strandat 1690.758 kb on - strandat 1690.824 kb on + strand, within Dshi_1625at 1690.939 kb on + strand, within Dshi_1625at 1690.950 kb on + strand, within Dshi_1625at 1691.007 kb on + strand, within Dshi_1625

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,688,042 - Dshi_1622 0.76 -1.2
1,688,043 - Dshi_1622 0.76 -0.5
1,688,048 - Dshi_1622 0.76 -1.4
1,688,093 + Dshi_1622 0.79 -0.5
1,688,093 + Dshi_1622 0.79 -0.3
1,688,189 - Dshi_1622 0.86 -0.4
1,688,343 - -1.2
1,688,449 - -0.3
1,688,471 - -0.4
1,688,481 + -0.6
1,688,499 - -0.3
1,688,530 + +0.2
1,688,620 - +0.8
1,688,659 - -0.6
1,688,815 + -2.4
1,688,823 - -0.0
1,688,923 - -2.8
1,688,923 - +0.1
1,690,678 - Dshi_1624 0.89 -0.6
1,690,750 + -2.0
1,690,758 - -1.7
1,690,824 + Dshi_1625 0.10 -2.4
1,690,939 + Dshi_1625 0.33 +0.1
1,690,950 + Dshi_1625 0.36 -1.4
1,691,007 + Dshi_1625 0.47 -0.9

Or see this region's nucleotide sequence