Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1529

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1528 and Dshi_1529 are separated by 66 nucleotidesDshi_1529 and Dshi_1530 overlap by 4 nucleotidesDshi_1530 and Dshi_1531 are separated by 103 nucleotides Dshi_1528: Dshi_1528 - domain of unknown function DUF1732 (RefSeq), at 1,589,674 to 1,590,558 _1528 Dshi_1529: Dshi_1529 - Guanylate kinase (RefSeq), at 1,590,625 to 1,591,278 _1529 Dshi_1530: Dshi_1530 - transferase hexapeptide repeat containing protein (RefSeq), at 1,591,275 to 1,591,799 _1530 Dshi_1531: Dshi_1531 - hypothetical protein (RefSeq), at 1,591,903 to 1,592,376 _1531 Position (kb) 1590 1591 1592Strain fitness (log2 ratio) -1 0 1at 1589.651 kb on + strandat 1589.659 kb on + strandat 1589.659 kb on + strandat 1589.659 kb on + strandat 1589.659 kb on - strandat 1589.664 kb on + strandat 1589.667 kb on - strandat 1589.667 kb on - strandat 1589.672 kb on - strandat 1589.700 kb on - strandat 1589.702 kb on + strandat 1589.710 kb on + strandat 1589.710 kb on - strandat 1589.715 kb on + strandat 1589.715 kb on + strandat 1589.716 kb on + strandat 1589.716 kb on + strandat 1589.723 kb on + strandat 1589.723 kb on - strandat 1589.724 kb on - strandat 1589.725 kb on + strandat 1589.734 kb on - strandat 1589.755 kb on - strandat 1589.767 kb on - strand, within Dshi_1528at 1589.787 kb on + strand, within Dshi_1528at 1589.804 kb on - strand, within Dshi_1528at 1589.920 kb on - strand, within Dshi_1528at 1590.086 kb on - strand, within Dshi_1528at 1590.291 kb on + strand, within Dshi_1528at 1590.299 kb on + strand, within Dshi_1528at 1590.307 kb on - strand, within Dshi_1528at 1590.307 kb on - strand, within Dshi_1528at 1590.362 kb on + strand, within Dshi_1528at 1590.362 kb on + strand, within Dshi_1528at 1590.423 kb on - strand, within Dshi_1528at 1590.479 kb on + strandat 1590.503 kb on - strandat 1590.513 kb on + strandat 1590.549 kb on - strandat 1590.563 kb on + strandat 1590.586 kb on + strandat 1591.322 kb on - strandat 1591.333 kb on - strand, within Dshi_1530at 1591.333 kb on - strand, within Dshi_1530at 1591.376 kb on + strand, within Dshi_1530at 1591.384 kb on - strand, within Dshi_1530at 1591.558 kb on + strand, within Dshi_1530at 1591.613 kb on - strand, within Dshi_1530at 1591.630 kb on + strand, within Dshi_1530at 1591.663 kb on - strand, within Dshi_1530at 1591.664 kb on - strand, within Dshi_1530at 1591.705 kb on + strand, within Dshi_1530at 1591.719 kb on + strand, within Dshi_1530at 1591.771 kb on + strandat 1591.873 kb on + strandat 1591.878 kb on + strandat 1591.995 kb on + strand, within Dshi_1531at 1591.995 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.000 kb on + strand, within Dshi_1531at 1592.003 kb on - strand, within Dshi_1531at 1592.003 kb on - strand, within Dshi_1531at 1592.003 kb on - strand, within Dshi_1531at 1592.003 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.008 kb on - strand, within Dshi_1531at 1592.010 kb on + strand, within Dshi_1531at 1592.010 kb on + strand, within Dshi_1531at 1592.010 kb on + strand, within Dshi_1531at 1592.010 kb on + strand, within Dshi_1531at 1592.013 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.018 kb on - strand, within Dshi_1531at 1592.033 kb on + strand, within Dshi_1531at 1592.048 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.053 kb on + strand, within Dshi_1531at 1592.056 kb on - strand, within Dshi_1531at 1592.061 kb on - strand, within Dshi_1531at 1592.061 kb on - strand, within Dshi_1531at 1592.061 kb on - strand, within Dshi_1531at 1592.061 kb on - strand, within Dshi_1531at 1592.067 kb on - strand, within Dshi_1531at 1592.154 kb on + strand, within Dshi_1531at 1592.173 kb on + strand, within Dshi_1531at 1592.190 kb on - strand, within Dshi_1531at 1592.195 kb on + strand, within Dshi_1531at 1592.204 kb on - strand, within Dshi_1531at 1592.218 kb on + strand, within Dshi_1531at 1592.218 kb on - strand, within Dshi_1531at 1592.238 kb on + strand, within Dshi_1531at 1592.266 kb on - strand, within Dshi_1531at 1592.266 kb on - strand, within Dshi_1531

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,589,651 + -1.1
1,589,659 + -0.0
1,589,659 + -0.2
1,589,659 + +0.7
1,589,659 - +0.2
1,589,664 + +0.8
1,589,667 - +1.0
1,589,667 - +0.7
1,589,672 - +0.2
1,589,700 - +0.5
1,589,702 + -0.4
1,589,710 + +0.4
1,589,710 - +0.9
1,589,715 + +0.1
1,589,715 + +0.1
1,589,716 + +0.2
1,589,716 + +1.3
1,589,723 + -0.0
1,589,723 - +0.2
1,589,724 - -0.3
1,589,725 + -0.2
1,589,734 - +0.5
1,589,755 - +0.3
1,589,767 - Dshi_1528 0.11 -1.2
1,589,787 + Dshi_1528 0.13 +0.3
1,589,804 - Dshi_1528 0.15 -0.2
1,589,920 - Dshi_1528 0.28 +0.6
1,590,086 - Dshi_1528 0.47 +0.3
1,590,291 + Dshi_1528 0.70 +0.8
1,590,299 + Dshi_1528 0.71 +1.2
1,590,307 - Dshi_1528 0.72 +0.1
1,590,307 - Dshi_1528 0.72 -1.6
1,590,362 + Dshi_1528 0.78 +0.8
1,590,362 + Dshi_1528 0.78 -1.4
1,590,423 - Dshi_1528 0.85 -0.4
1,590,479 + -0.1
1,590,503 - -0.3
1,590,513 + +1.1
1,590,549 - +0.9
1,590,563 + +0.2
1,590,586 + +0.1
1,591,322 - -1.0
1,591,333 - Dshi_1530 0.11 +0.6
1,591,333 - Dshi_1530 0.11 +0.1
1,591,376 + Dshi_1530 0.19 +0.2
1,591,384 - Dshi_1530 0.21 -0.1
1,591,558 + Dshi_1530 0.54 +0.1
1,591,613 - Dshi_1530 0.64 -0.1
1,591,630 + Dshi_1530 0.68 +1.0
1,591,663 - Dshi_1530 0.74 +0.7
1,591,664 - Dshi_1530 0.74 -1.0
1,591,705 + Dshi_1530 0.82 +1.5
1,591,719 + Dshi_1530 0.85 -1.0
1,591,771 + +1.5
1,591,873 + -1.7
1,591,878 + +1.0
1,591,995 + Dshi_1531 0.19 -0.3
1,591,995 + Dshi_1531 0.19 +0.6
1,592,000 + Dshi_1531 0.20 +0.1
1,592,000 + Dshi_1531 0.20 -0.4
1,592,000 + Dshi_1531 0.20 +0.5
1,592,000 + Dshi_1531 0.20 +0.1
1,592,000 + Dshi_1531 0.20 -1.0
1,592,000 + Dshi_1531 0.20 -0.6
1,592,000 + Dshi_1531 0.20 +0.7
1,592,000 + Dshi_1531 0.20 +0.1
1,592,000 + Dshi_1531 0.20 -1.1
1,592,000 + Dshi_1531 0.20 +0.2
1,592,000 + Dshi_1531 0.20 -0.2
1,592,000 + Dshi_1531 0.20 +1.1
1,592,000 + Dshi_1531 0.20 -1.1
1,592,000 + Dshi_1531 0.20 -0.2
1,592,000 + Dshi_1531 0.20 +0.5
1,592,000 + Dshi_1531 0.20 +1.7
1,592,000 + Dshi_1531 0.20 -0.5
1,592,000 + Dshi_1531 0.20 -0.9
1,592,000 + Dshi_1531 0.20 -0.3
1,592,000 + Dshi_1531 0.20 +0.7
1,592,000 + Dshi_1531 0.20 -0.9
1,592,000 + Dshi_1531 0.20 +0.6
1,592,000 + Dshi_1531 0.20 -1.6
1,592,000 + Dshi_1531 0.20 -0.2
1,592,003 - Dshi_1531 0.21 -1.1
1,592,003 - Dshi_1531 0.21 +1.1
1,592,003 - Dshi_1531 0.21 +0.1
1,592,003 - Dshi_1531 0.21 -0.4
1,592,008 - Dshi_1531 0.22 +0.5
1,592,008 - Dshi_1531 0.22 +0.3
1,592,008 - Dshi_1531 0.22 +0.2
1,592,008 - Dshi_1531 0.22 -0.1
1,592,008 - Dshi_1531 0.22 +0.1
1,592,008 - Dshi_1531 0.22 -0.0
1,592,008 - Dshi_1531 0.22 -0.8
1,592,008 - Dshi_1531 0.22 -1.5
1,592,008 - Dshi_1531 0.22 -0.1
1,592,008 - Dshi_1531 0.22 +0.4
1,592,008 - Dshi_1531 0.22 -0.3
1,592,008 - Dshi_1531 0.22 -0.4
1,592,008 - Dshi_1531 0.22 +0.3
1,592,008 - Dshi_1531 0.22 +0.4
1,592,008 - Dshi_1531 0.22 +0.3
1,592,008 - Dshi_1531 0.22 +0.1
1,592,008 - Dshi_1531 0.22 -0.3
1,592,008 - Dshi_1531 0.22 -0.3
1,592,008 - Dshi_1531 0.22 +0.5
1,592,008 - Dshi_1531 0.22 +0.1
1,592,008 - Dshi_1531 0.22 +0.1
1,592,008 - Dshi_1531 0.22 +0.2
1,592,008 - Dshi_1531 0.22 +0.5
1,592,008 - Dshi_1531 0.22 +0.5
1,592,008 - Dshi_1531 0.22 -0.3
1,592,008 - Dshi_1531 0.22 +1.0
1,592,010 + Dshi_1531 0.23 +0.3
1,592,010 + Dshi_1531 0.23 -0.4
1,592,010 + Dshi_1531 0.23 -0.3
1,592,010 + Dshi_1531 0.23 -0.2
1,592,013 - Dshi_1531 0.23 +0.7
1,592,018 - Dshi_1531 0.24 -0.0
1,592,018 - Dshi_1531 0.24 -0.0
1,592,018 - Dshi_1531 0.24 +0.7
1,592,018 - Dshi_1531 0.24 +0.4
1,592,018 - Dshi_1531 0.24 -0.7
1,592,018 - Dshi_1531 0.24 +1.2
1,592,018 - Dshi_1531 0.24 +0.4
1,592,033 + Dshi_1531 0.27 -0.4
1,592,048 + Dshi_1531 0.31 -0.6
1,592,053 + Dshi_1531 0.32 +0.4
1,592,053 + Dshi_1531 0.32 +0.2
1,592,053 + Dshi_1531 0.32 -0.2
1,592,053 + Dshi_1531 0.32 -0.1
1,592,053 + Dshi_1531 0.32 -0.8
1,592,053 + Dshi_1531 0.32 -0.1
1,592,053 + Dshi_1531 0.32 +0.3
1,592,056 - Dshi_1531 0.32 -0.2
1,592,061 - Dshi_1531 0.33 +0.5
1,592,061 - Dshi_1531 0.33 -0.6
1,592,061 - Dshi_1531 0.33 +1.5
1,592,061 - Dshi_1531 0.33 +0.1
1,592,067 - Dshi_1531 0.35 -0.3
1,592,154 + Dshi_1531 0.53 -0.1
1,592,173 + Dshi_1531 0.57 +0.1
1,592,190 - Dshi_1531 0.61 +0.3
1,592,195 + Dshi_1531 0.62 +0.3
1,592,204 - Dshi_1531 0.64 +0.5
1,592,218 + Dshi_1531 0.66 +0.0
1,592,218 - Dshi_1531 0.66 +0.7
1,592,238 + Dshi_1531 0.71 +0.5
1,592,266 - Dshi_1531 0.77 +0.4
1,592,266 - Dshi_1531 0.77 +0.4

Or see this region's nucleotide sequence