Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1497

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1495 and Dshi_1496 are separated by 20 nucleotidesDshi_1496 and Dshi_1497 are separated by 23 nucleotidesDshi_1497 and Dshi_1498 are separated by 61 nucleotides Dshi_1495: Dshi_1495 - undecaprenyl diphosphate synthase (RefSeq), at 1,554,231 to 1,554,962 _1495 Dshi_1496: Dshi_1496 - phosphatidate cytidylyltransferase (RefSeq), at 1,554,983 to 1,555,774 _1496 Dshi_1497: Dshi_1497 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (RefSeq), at 1,555,798 to 1,556,979 _1497 Dshi_1498: Dshi_1498 - putative membrane-associated zinc metalloprotease (RefSeq), at 1,557,041 to 1,558,378 _1498 Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -1 0 1 2at 1555.785 kb on + strandat 1557.259 kb on + strand, within Dshi_1498at 1557.330 kb on - strand, within Dshi_1498at 1557.415 kb on + strand, within Dshi_1498at 1557.577 kb on + strand, within Dshi_1498at 1557.788 kb on + strand, within Dshi_1498at 1557.910 kb on + strand, within Dshi_1498

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,555,785 + -0.8
1,557,259 + Dshi_1498 0.16 +2.1
1,557,330 - Dshi_1498 0.22 +0.5
1,557,415 + Dshi_1498 0.28 -0.5
1,557,577 + Dshi_1498 0.40 +0.5
1,557,788 + Dshi_1498 0.56 +1.6
1,557,910 + Dshi_1498 0.65 +2.6

Or see this region's nucleotide sequence