Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1431

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1430 and Dshi_1431 are separated by 98 nucleotidesDshi_1431 and Dshi_1432 are separated by 130 nucleotides Dshi_1430: Dshi_1430 - aldehyde dehydrogenase (RefSeq), at 1,485,573 to 1,487,036 _1430 Dshi_1431: Dshi_1431 - transcriptional regulator, LysR family (RefSeq), at 1,487,135 to 1,488,091 _1431 Dshi_1432: Dshi_1432 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 1,488,222 to 1,489,370 _1432 Position (kb) 1487 1488 1489Strain fitness (log2 ratio) -2 -1 0 1 2at 1486.157 kb on + strand, within Dshi_1430at 1486.425 kb on - strand, within Dshi_1430at 1486.501 kb on + strand, within Dshi_1430at 1486.526 kb on + strand, within Dshi_1430at 1486.529 kb on + strand, within Dshi_1430at 1486.558 kb on + strand, within Dshi_1430at 1486.596 kb on + strand, within Dshi_1430at 1486.740 kb on + strand, within Dshi_1430at 1486.788 kb on - strand, within Dshi_1430at 1486.833 kb on - strand, within Dshi_1430at 1486.851 kb on + strand, within Dshi_1430at 1486.892 kb on + strandat 1486.989 kb on + strandat 1487.068 kb on + strandat 1487.068 kb on + strandat 1487.076 kb on - strandat 1487.076 kb on - strandat 1487.187 kb on + strandat 1487.214 kb on - strandat 1487.230 kb on + strandat 1487.255 kb on - strand, within Dshi_1431at 1487.291 kb on - strand, within Dshi_1431at 1487.298 kb on + strand, within Dshi_1431at 1487.299 kb on - strand, within Dshi_1431at 1487.428 kb on - strand, within Dshi_1431at 1487.460 kb on + strand, within Dshi_1431at 1487.584 kb on - strand, within Dshi_1431at 1487.584 kb on - strand, within Dshi_1431at 1487.648 kb on - strand, within Dshi_1431at 1487.673 kb on - strand, within Dshi_1431at 1487.733 kb on + strand, within Dshi_1431at 1487.779 kb on + strand, within Dshi_1431at 1487.782 kb on - strand, within Dshi_1431at 1487.783 kb on - strand, within Dshi_1431at 1487.783 kb on - strand, within Dshi_1431at 1487.787 kb on - strand, within Dshi_1431at 1487.876 kb on + strand, within Dshi_1431at 1487.884 kb on - strand, within Dshi_1431at 1487.897 kb on + strand, within Dshi_1431at 1487.923 kb on + strand, within Dshi_1431at 1487.931 kb on - strand, within Dshi_1431at 1488.011 kb on - strandat 1488.015 kb on + strandat 1488.015 kb on + strandat 1488.015 kb on + strandat 1488.015 kb on + strandat 1488.023 kb on - strandat 1488.173 kb on - strandat 1488.228 kb on + strandat 1488.258 kb on - strandat 1488.332 kb on + strandat 1488.353 kb on + strand, within Dshi_1432at 1488.363 kb on - strand, within Dshi_1432at 1488.363 kb on - strand, within Dshi_1432at 1488.392 kb on - strand, within Dshi_1432at 1488.424 kb on + strand, within Dshi_1432at 1488.432 kb on - strand, within Dshi_1432at 1488.459 kb on - strand, within Dshi_1432at 1488.478 kb on - strand, within Dshi_1432at 1488.559 kb on + strand, within Dshi_1432at 1488.559 kb on + strand, within Dshi_1432at 1488.559 kb on + strand, within Dshi_1432at 1488.567 kb on - strand, within Dshi_1432at 1488.567 kb on - strand, within Dshi_1432at 1488.567 kb on - strand, within Dshi_1432at 1488.597 kb on + strand, within Dshi_1432at 1488.624 kb on + strand, within Dshi_1432at 1488.652 kb on - strand, within Dshi_1432at 1488.733 kb on - strand, within Dshi_1432at 1488.769 kb on - strand, within Dshi_1432at 1488.771 kb on + strand, within Dshi_1432at 1488.780 kb on + strand, within Dshi_1432at 1488.780 kb on + strand, within Dshi_1432at 1488.788 kb on - strand, within Dshi_1432at 1488.788 kb on - strand, within Dshi_1432at 1488.838 kb on - strand, within Dshi_1432at 1488.896 kb on + strand, within Dshi_1432at 1488.901 kb on + strand, within Dshi_1432at 1488.911 kb on + strand, within Dshi_1432at 1489.022 kb on - strand, within Dshi_1432at 1489.068 kb on + strand, within Dshi_1432at 1489.082 kb on - strand, within Dshi_1432

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
remove
1,486,157 + Dshi_1430 0.40 -0.4
1,486,425 - Dshi_1430 0.58 +1.0
1,486,501 + Dshi_1430 0.63 -0.9
1,486,526 + Dshi_1430 0.65 +0.9
1,486,529 + Dshi_1430 0.65 -0.4
1,486,558 + Dshi_1430 0.67 -0.8
1,486,596 + Dshi_1430 0.70 +0.9
1,486,740 + Dshi_1430 0.80 -0.7
1,486,788 - Dshi_1430 0.83 +1.1
1,486,833 - Dshi_1430 0.86 +0.8
1,486,851 + Dshi_1430 0.87 -0.6
1,486,892 + -0.0
1,486,989 + -0.1
1,487,068 + +0.5
1,487,068 + -1.1
1,487,076 - +1.8
1,487,076 - +0.5
1,487,187 + -0.3
1,487,214 - +0.9
1,487,230 + -1.0
1,487,255 - Dshi_1431 0.13 +0.3
1,487,291 - Dshi_1431 0.16 -0.6
1,487,298 + Dshi_1431 0.17 +1.8
1,487,299 - Dshi_1431 0.17 +0.3
1,487,428 - Dshi_1431 0.31 +0.8
1,487,460 + Dshi_1431 0.34 +0.1
1,487,584 - Dshi_1431 0.47 +1.4
1,487,584 - Dshi_1431 0.47 +0.2
1,487,648 - Dshi_1431 0.54 -1.5
1,487,673 - Dshi_1431 0.56 +0.4
1,487,733 + Dshi_1431 0.62 +0.4
1,487,779 + Dshi_1431 0.67 +0.0
1,487,782 - Dshi_1431 0.68 +0.1
1,487,783 - Dshi_1431 0.68 +0.5
1,487,783 - Dshi_1431 0.68 +0.5
1,487,787 - Dshi_1431 0.68 -0.8
1,487,876 + Dshi_1431 0.77 -0.6
1,487,884 - Dshi_1431 0.78 -0.4
1,487,897 + Dshi_1431 0.80 -0.1
1,487,923 + Dshi_1431 0.82 +1.2
1,487,931 - Dshi_1431 0.83 -0.4
1,488,011 - +1.3
1,488,015 + +0.1
1,488,015 + -0.4
1,488,015 + -0.6
1,488,015 + +0.4
1,488,023 - -0.2
1,488,173 - -1.9
1,488,228 + -1.1
1,488,258 - +0.0
1,488,332 + +0.3
1,488,353 + Dshi_1432 0.11 +0.1
1,488,363 - Dshi_1432 0.12 +0.2
1,488,363 - Dshi_1432 0.12 +0.7
1,488,392 - Dshi_1432 0.15 -0.1
1,488,424 + Dshi_1432 0.18 +0.6
1,488,432 - Dshi_1432 0.18 +0.2
1,488,459 - Dshi_1432 0.21 +0.4
1,488,478 - Dshi_1432 0.22 -0.9
1,488,559 + Dshi_1432 0.29 +0.4
1,488,559 + Dshi_1432 0.29 -0.6
1,488,559 + Dshi_1432 0.29 -0.9
1,488,567 - Dshi_1432 0.30 +0.5
1,488,567 - Dshi_1432 0.30 +1.0
1,488,567 - Dshi_1432 0.30 +0.4
1,488,597 + Dshi_1432 0.33 -0.3
1,488,624 + Dshi_1432 0.35 +0.0
1,488,652 - Dshi_1432 0.37 +1.5
1,488,733 - Dshi_1432 0.44 -0.4
1,488,769 - Dshi_1432 0.48 -1.1
1,488,771 + Dshi_1432 0.48 +1.1
1,488,780 + Dshi_1432 0.49 -1.3
1,488,780 + Dshi_1432 0.49 +0.2
1,488,788 - Dshi_1432 0.49 +0.2
1,488,788 - Dshi_1432 0.49 +0.0
1,488,838 - Dshi_1432 0.54 +0.1
1,488,896 + Dshi_1432 0.59 -0.1
1,488,901 + Dshi_1432 0.59 +1.3
1,488,911 + Dshi_1432 0.60 +0.5
1,489,022 - Dshi_1432 0.70 +0.4
1,489,068 + Dshi_1432 0.74 -0.2
1,489,082 - Dshi_1432 0.75 -0.5

Or see this region's nucleotide sequence