Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1427

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1426 and Dshi_1427 are separated by 10 nucleotidesDshi_1427 and Dshi_1428 are separated by 93 nucleotides Dshi_1426: Dshi_1426 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (RefSeq), at 1,479,836 to 1,481,350 _1426 Dshi_1427: Dshi_1427 - Citrate CoA-transferase (RefSeq), at 1,481,361 to 1,482,908 _1427 Dshi_1428: Dshi_1428 - glucose-methanol-choline oxidoreductase (RefSeq), at 1,483,002 to 1,484,636 _1428 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -2 -1 0 1at 1480.406 kb on - strand, within Dshi_1426at 1480.431 kb on + strand, within Dshi_1426at 1480.786 kb on - strand, within Dshi_1426at 1480.835 kb on - strand, within Dshi_1426at 1481.056 kb on + strand, within Dshi_1426at 1481.254 kb on - strandat 1481.254 kb on - strandat 1481.310 kb on - strandat 1481.325 kb on + strandat 1481.394 kb on + strandat 1481.402 kb on - strandat 1481.402 kb on - strandat 1481.461 kb on - strandat 1481.723 kb on + strand, within Dshi_1427at 1481.801 kb on - strand, within Dshi_1427at 1481.827 kb on + strand, within Dshi_1427at 1481.835 kb on - strand, within Dshi_1427at 1481.917 kb on + strand, within Dshi_1427at 1481.952 kb on + strand, within Dshi_1427at 1482.086 kb on + strand, within Dshi_1427at 1482.302 kb on - strand, within Dshi_1427at 1482.606 kb on + strand, within Dshi_1427at 1482.742 kb on + strand, within Dshi_1427at 1482.828 kb on + strandat 1482.843 kb on + strandat 1482.851 kb on - strandat 1482.865 kb on + strandat 1482.929 kb on - strandat 1482.943 kb on + strandat 1482.960 kb on + strandat 1482.987 kb on - strandat 1483.063 kb on - strandat 1483.136 kb on + strandat 1483.145 kb on + strandat 1483.324 kb on + strand, within Dshi_1428at 1483.463 kb on - strand, within Dshi_1428at 1483.491 kb on + strand, within Dshi_1428at 1483.533 kb on + strand, within Dshi_1428at 1483.560 kb on + strand, within Dshi_1428at 1483.676 kb on - strand, within Dshi_1428at 1483.736 kb on + strand, within Dshi_1428at 1483.744 kb on - strand, within Dshi_1428at 1483.804 kb on + strand, within Dshi_1428at 1483.841 kb on + strand, within Dshi_1428at 1483.849 kb on - strand, within Dshi_1428

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,480,406 - Dshi_1426 0.38 -1.0
1,480,431 + Dshi_1426 0.39 +0.5
1,480,786 - Dshi_1426 0.63 -0.8
1,480,835 - Dshi_1426 0.66 +0.5
1,481,056 + Dshi_1426 0.81 +0.5
1,481,254 - -0.0
1,481,254 - -0.8
1,481,310 - -0.2
1,481,325 + +0.1
1,481,394 + -0.7
1,481,402 - -0.9
1,481,402 - +0.8
1,481,461 - +1.0
1,481,723 + Dshi_1427 0.23 +0.1
1,481,801 - Dshi_1427 0.28 -2.1
1,481,827 + Dshi_1427 0.30 -0.4
1,481,835 - Dshi_1427 0.31 -0.1
1,481,917 + Dshi_1427 0.36 +0.0
1,481,952 + Dshi_1427 0.38 +1.1
1,482,086 + Dshi_1427 0.47 +0.1
1,482,302 - Dshi_1427 0.61 +0.4
1,482,606 + Dshi_1427 0.80 +0.7
1,482,742 + Dshi_1427 0.89 +1.3
1,482,828 + +0.3
1,482,843 + -0.2
1,482,851 - +0.2
1,482,865 + -1.3
1,482,929 - -1.1
1,482,943 + -0.5
1,482,960 + -1.4
1,482,987 - -1.4
1,483,063 - +0.4
1,483,136 + -2.1
1,483,145 + -0.2
1,483,324 + Dshi_1428 0.20 -0.2
1,483,463 - Dshi_1428 0.28 +0.9
1,483,491 + Dshi_1428 0.30 +1.0
1,483,533 + Dshi_1428 0.32 +0.9
1,483,560 + Dshi_1428 0.34 -1.4
1,483,676 - Dshi_1428 0.41 -0.5
1,483,736 + Dshi_1428 0.45 -2.0
1,483,744 - Dshi_1428 0.45 -0.6
1,483,804 + Dshi_1428 0.49 +0.4
1,483,841 + Dshi_1428 0.51 -1.4
1,483,849 - Dshi_1428 0.52 +0.3

Or see this region's nucleotide sequence