Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1425

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1424 and Dshi_1425 are separated by 18 nucleotidesDshi_1425 and Dshi_1426 are separated by 60 nucleotides Dshi_1424: Dshi_1424 - inner-membrane translocator (RefSeq), at 1,477,271 to 1,478,302 _1424 Dshi_1425: Dshi_1425 - aldehyde dehydrogenase (RefSeq), at 1,478,321 to 1,479,775 _1425 Dshi_1426: Dshi_1426 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (RefSeq), at 1,479,836 to 1,481,350 _1426 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -2 -1 0 1 2at 1477.387 kb on + strand, within Dshi_1424at 1477.583 kb on - strand, within Dshi_1424at 1477.600 kb on - strand, within Dshi_1424at 1477.697 kb on - strand, within Dshi_1424at 1477.702 kb on - strand, within Dshi_1424at 1477.767 kb on + strand, within Dshi_1424at 1477.817 kb on + strand, within Dshi_1424at 1477.852 kb on - strand, within Dshi_1424at 1477.871 kb on + strand, within Dshi_1424at 1477.871 kb on + strand, within Dshi_1424at 1477.971 kb on + strand, within Dshi_1424at 1478.029 kb on + strand, within Dshi_1424at 1478.068 kb on - strand, within Dshi_1424at 1478.078 kb on - strand, within Dshi_1424at 1478.162 kb on + strand, within Dshi_1424at 1478.204 kb on + strandat 1478.204 kb on + strandat 1478.204 kb on + strandat 1478.212 kb on - strandat 1478.212 kb on - strandat 1478.217 kb on - strandat 1478.217 kb on - strandat 1478.494 kb on + strand, within Dshi_1425at 1478.617 kb on + strand, within Dshi_1425at 1478.632 kb on + strand, within Dshi_1425at 1478.768 kb on + strand, within Dshi_1425at 1478.774 kb on + strand, within Dshi_1425at 1478.776 kb on - strand, within Dshi_1425at 1478.776 kb on - strand, within Dshi_1425at 1478.878 kb on + strand, within Dshi_1425at 1478.886 kb on - strand, within Dshi_1425at 1478.898 kb on - strand, within Dshi_1425at 1478.972 kb on + strand, within Dshi_1425at 1479.047 kb on + strand, within Dshi_1425at 1479.072 kb on - strand, within Dshi_1425at 1479.160 kb on - strand, within Dshi_1425at 1479.165 kb on - strand, within Dshi_1425at 1479.175 kb on - strand, within Dshi_1425at 1479.223 kb on - strand, within Dshi_1425at 1479.266 kb on + strand, within Dshi_1425at 1479.301 kb on - strand, within Dshi_1425at 1479.325 kb on - strand, within Dshi_1425at 1479.376 kb on + strand, within Dshi_1425at 1479.378 kb on - strand, within Dshi_1425at 1479.499 kb on - strand, within Dshi_1425at 1479.533 kb on + strand, within Dshi_1425at 1479.533 kb on + strand, within Dshi_1425at 1479.577 kb on + strand, within Dshi_1425at 1479.585 kb on - strand, within Dshi_1425at 1479.621 kb on + strand, within Dshi_1425at 1479.736 kb on - strandat 1479.748 kb on + strandat 1479.764 kb on - strandat 1479.788 kb on - strandat 1479.821 kb on - strandat 1479.940 kb on + strandat 1480.022 kb on - strand, within Dshi_1426at 1480.157 kb on - strand, within Dshi_1426at 1480.243 kb on + strand, within Dshi_1426at 1480.299 kb on - strand, within Dshi_1426at 1480.406 kb on - strand, within Dshi_1426at 1480.431 kb on + strand, within Dshi_1426

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,477,387 + Dshi_1424 0.11 +0.3
1,477,583 - Dshi_1424 0.30 +0.7
1,477,600 - Dshi_1424 0.32 +0.3
1,477,697 - Dshi_1424 0.41 +0.2
1,477,702 - Dshi_1424 0.42 -1.1
1,477,767 + Dshi_1424 0.48 -1.3
1,477,817 + Dshi_1424 0.53 -0.1
1,477,852 - Dshi_1424 0.56 +0.2
1,477,871 + Dshi_1424 0.58 -0.5
1,477,871 + Dshi_1424 0.58 +1.0
1,477,971 + Dshi_1424 0.68 -0.6
1,478,029 + Dshi_1424 0.73 -0.3
1,478,068 - Dshi_1424 0.77 -0.5
1,478,078 - Dshi_1424 0.78 +0.7
1,478,162 + Dshi_1424 0.86 -0.1
1,478,204 + -1.1
1,478,204 + +0.3
1,478,204 + -1.2
1,478,212 - +0.2
1,478,212 - -0.7
1,478,217 - +0.2
1,478,217 - -0.2
1,478,494 + Dshi_1425 0.12 +0.4
1,478,617 + Dshi_1425 0.20 +0.8
1,478,632 + Dshi_1425 0.21 +0.7
1,478,768 + Dshi_1425 0.31 -0.2
1,478,774 + Dshi_1425 0.31 -0.6
1,478,776 - Dshi_1425 0.31 +0.4
1,478,776 - Dshi_1425 0.31 -0.5
1,478,878 + Dshi_1425 0.38 +0.7
1,478,886 - Dshi_1425 0.39 +2.3
1,478,898 - Dshi_1425 0.40 -0.4
1,478,972 + Dshi_1425 0.45 +0.9
1,479,047 + Dshi_1425 0.50 -0.1
1,479,072 - Dshi_1425 0.52 +1.2
1,479,160 - Dshi_1425 0.58 +0.8
1,479,165 - Dshi_1425 0.58 +0.1
1,479,175 - Dshi_1425 0.59 +0.6
1,479,223 - Dshi_1425 0.62 -0.1
1,479,266 + Dshi_1425 0.65 +0.5
1,479,301 - Dshi_1425 0.67 +0.7
1,479,325 - Dshi_1425 0.69 +0.4
1,479,376 + Dshi_1425 0.73 -1.1
1,479,378 - Dshi_1425 0.73 -0.2
1,479,499 - Dshi_1425 0.81 -0.9
1,479,533 + Dshi_1425 0.83 -1.9
1,479,533 + Dshi_1425 0.83 -0.6
1,479,577 + Dshi_1425 0.86 +1.4
1,479,585 - Dshi_1425 0.87 +0.0
1,479,621 + Dshi_1425 0.89 +0.0
1,479,736 - +0.6
1,479,748 + +0.1
1,479,764 - +0.9
1,479,788 - -1.1
1,479,821 - -0.2
1,479,940 + +0.5
1,480,022 - Dshi_1426 0.12 -1.3
1,480,157 - Dshi_1426 0.21 -0.0
1,480,243 + Dshi_1426 0.27 +2.3
1,480,299 - Dshi_1426 0.31 -0.1
1,480,406 - Dshi_1426 0.38 -1.0
1,480,431 + Dshi_1426 0.39 +0.5

Or see this region's nucleotide sequence