Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1335 and Dshi_1336 are separated by 93 nucleotides Dshi_1336 and Dshi_1337 are separated by 113 nucleotides Dshi_1337 and Dshi_1338 are separated by 67 nucleotides
Dshi_1335: Dshi_1335 - hypothetical protein (RefSeq), at 1,388,539 to 1,389,207
_1335
Dshi_1336: Dshi_1336 - peptide chain release factor 3 (RefSeq), at 1,389,301 to 1,390,908
_1336
Dshi_1337: Dshi_1337 - hypothetical protein (RefSeq), at 1,391,022 to 1,391,393
_1337
Dshi_1338: Dshi_1338 - UspA domain protein (RefSeq), at 1,391,461 to 1,392,303
_1338
Position (kb)
1389
1390
1391 Strain fitness (log2 ratio)
-2
-1
0
1 at 1388.328 kb on + strand at 1388.335 kb on + strand at 1388.388 kb on + strand at 1388.404 kb on + strand at 1388.411 kb on + strand at 1388.416 kb on + strand at 1388.423 kb on + strand at 1388.435 kb on + strand at 1388.442 kb on + strand at 1388.448 kb on + strand at 1388.535 kb on - strand at 1388.536 kb on - strand at 1388.566 kb on + strand at 1388.574 kb on - strand at 1388.602 kb on + strand at 1388.605 kb on + strand at 1388.723 kb on - strand, within Dshi_1335 at 1388.750 kb on - strand, within Dshi_1335 at 1388.804 kb on + strand, within Dshi_1335 at 1388.905 kb on + strand, within Dshi_1335 at 1389.034 kb on + strand, within Dshi_1335 at 1389.326 kb on + strand at 1389.349 kb on - strand at 1389.369 kb on - strand at 1389.509 kb on - strand, within Dshi_1336 at 1389.663 kb on + strand, within Dshi_1336 at 1390.196 kb on + strand, within Dshi_1336 at 1390.349 kb on - strand, within Dshi_1336 at 1390.349 kb on - strand, within Dshi_1336 at 1390.638 kb on - strand, within Dshi_1336 at 1390.759 kb on - strand at 1390.879 kb on + strand at 1390.887 kb on + strand at 1390.900 kb on + strand at 1390.922 kb on - strand at 1390.922 kb on - strand at 1391.096 kb on + strand, within Dshi_1337 at 1391.320 kb on + strand, within Dshi_1337 at 1391.381 kb on - strand at 1391.488 kb on - strand at 1391.556 kb on - strand, within Dshi_1338 at 1391.565 kb on + strand, within Dshi_1338 at 1391.671 kb on - strand, within Dshi_1338 at 1391.706 kb on - strand, within Dshi_1338 at 1391.732 kb on + strand, within Dshi_1338 at 1391.785 kb on + strand, within Dshi_1338 at 1391.796 kb on - strand, within Dshi_1338 at 1391.826 kb on + strand, within Dshi_1338
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,388,328 + -0.4 1,388,335 + -1.0 1,388,388 + -1.1 1,388,404 + -0.5 1,388,411 + +0.9 1,388,416 + -0.3 1,388,423 + -0.6 1,388,435 + -0.3 1,388,442 + -1.3 1,388,448 + +1.0 1,388,535 - -0.6 1,388,536 - -0.3 1,388,566 + -0.3 1,388,574 - -0.3 1,388,602 + -0.5 1,388,605 + +0.2 1,388,723 - Dshi_1335 0.28 +1.1 1,388,750 - Dshi_1335 0.32 +0.7 1,388,804 + Dshi_1335 0.40 -0.7 1,388,905 + Dshi_1335 0.55 +0.6 1,389,034 + Dshi_1335 0.74 -0.1 1,389,326 + -1.0 1,389,349 - -1.0 1,389,369 - -1.0 1,389,509 - Dshi_1336 0.13 -1.6 1,389,663 + Dshi_1336 0.23 -0.6 1,390,196 + Dshi_1336 0.56 -1.2 1,390,349 - Dshi_1336 0.65 -1.4 1,390,349 - Dshi_1336 0.65 -2.6 1,390,638 - Dshi_1336 0.83 -1.2 1,390,759 - -1.6 1,390,879 + -0.9 1,390,887 + -2.1 1,390,900 + -1.1 1,390,922 - +0.2 1,390,922 - +0.2 1,391,096 + Dshi_1337 0.20 +1.6 1,391,320 + Dshi_1337 0.80 -0.4 1,391,381 - +1.6 1,391,488 - +0.1 1,391,556 - Dshi_1338 0.11 +0.1 1,391,565 + Dshi_1338 0.12 +0.1 1,391,671 - Dshi_1338 0.25 -0.4 1,391,706 - Dshi_1338 0.29 +0.5 1,391,732 + Dshi_1338 0.32 -0.2 1,391,785 + Dshi_1338 0.38 -0.3 1,391,796 - Dshi_1338 0.40 +1.5 1,391,826 + Dshi_1338 0.43 -0.0
Or see this region's nucleotide sequence