Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1205

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1203 and Dshi_1204 are separated by 9 nucleotidesDshi_1204 and Dshi_1205 are separated by 342 nucleotidesDshi_1205 and Dshi_1206 are separated by 290 nucleotidesDshi_1206 and Dshi_1207 are separated by 7 nucleotides Dshi_1203: Dshi_1203 - BolA family protein (RefSeq), at 1,243,189 to 1,243,446 _1203 Dshi_1204: Dshi_1204 - hypothetical protein (RefSeq), at 1,243,456 to 1,243,872 _1204 Dshi_1205: Dshi_1205 - hypothetical protein (RefSeq), at 1,244,215 to 1,244,763 _1205 Dshi_1206: Dshi_1206 - hypothetical protein (RefSeq), at 1,245,054 to 1,245,302 _1206 Dshi_1207: Dshi_1207 - glutamyl-tRNA(Gln) amidotransferase, B subunit (RefSeq), at 1,245,310 to 1,246,827 _1207 Position (kb) 1244 1245Strain fitness (log2 ratio) -2 -1 0 1at 1243.224 kb on - strand, within Dshi_1203at 1243.230 kb on - strand, within Dshi_1203at 1243.440 kb on + strandat 1243.602 kb on - strand, within Dshi_1204at 1243.673 kb on + strand, within Dshi_1204at 1243.681 kb on - strand, within Dshi_1204at 1243.704 kb on - strand, within Dshi_1204at 1243.728 kb on - strand, within Dshi_1204at 1243.829 kb on - strand, within Dshi_1204at 1243.924 kb on - strandat 1243.941 kb on - strandat 1244.142 kb on - strandat 1244.171 kb on - strandat 1244.173 kb on + strandat 1244.178 kb on + strandat 1244.178 kb on + strandat 1244.186 kb on - strandat 1244.292 kb on - strand, within Dshi_1205at 1244.292 kb on - strand, within Dshi_1205at 1244.292 kb on - strand, within Dshi_1205at 1244.441 kb on - strand, within Dshi_1205at 1244.479 kb on - strand, within Dshi_1205at 1244.576 kb on + strand, within Dshi_1205at 1244.783 kb on + strandat 1244.895 kb on - strandat 1244.964 kb on + strandat 1244.991 kb on + strandat 1245.237 kb on - strand, within Dshi_1206at 1245.291 kb on + strandat 1245.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,243,224 - Dshi_1203 0.14 -0.7
1,243,230 - Dshi_1203 0.16 -0.6
1,243,440 + +0.5
1,243,602 - Dshi_1204 0.35 -0.5
1,243,673 + Dshi_1204 0.52 +0.2
1,243,681 - Dshi_1204 0.54 -0.2
1,243,704 - Dshi_1204 0.59 -0.2
1,243,728 - Dshi_1204 0.65 +0.5
1,243,829 - Dshi_1204 0.89 +0.1
1,243,924 - -0.0
1,243,941 - -0.6
1,244,142 - +0.0
1,244,171 - +1.1
1,244,173 + -2.2
1,244,178 + +1.0
1,244,178 + -0.6
1,244,186 - -1.0
1,244,292 - Dshi_1205 0.14 -0.5
1,244,292 - Dshi_1205 0.14 -0.5
1,244,292 - Dshi_1205 0.14 -1.6
1,244,441 - Dshi_1205 0.41 +0.8
1,244,479 - Dshi_1205 0.48 -1.4
1,244,576 + Dshi_1205 0.66 +0.2
1,244,783 + -0.7
1,244,895 - +0.4
1,244,964 + +0.6
1,244,991 + -1.1
1,245,237 - Dshi_1206 0.73 -1.9
1,245,291 + +0.3
1,245,296 + +0.2

Or see this region's nucleotide sequence