Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1194

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1193 and Dshi_1194 are separated by 1 nucleotidesDshi_1194 and Dshi_1195 are separated by 96 nucleotides Dshi_1193: Dshi_1193 - cytochrome P450 (RefSeq), at 1,230,737 to 1,231,909 _1193 Dshi_1194: Dshi_1194 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data), at 1,231,911 to 1,234,142 _1194 Dshi_1195: Dshi_1195 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data), at 1,234,239 to 1,235,231 _1195 Position (kb) 1231 1232 1233 1234 1235Strain fitness (log2 ratio) -1 0 1at 1231.037 kb on + strand, within Dshi_1193at 1231.037 kb on + strand, within Dshi_1193at 1231.039 kb on + strand, within Dshi_1193at 1231.073 kb on + strand, within Dshi_1193at 1231.092 kb on - strand, within Dshi_1193at 1231.112 kb on + strand, within Dshi_1193at 1231.140 kb on - strand, within Dshi_1193at 1231.163 kb on + strand, within Dshi_1193at 1231.169 kb on + strand, within Dshi_1193at 1231.418 kb on - strand, within Dshi_1193at 1231.450 kb on - strand, within Dshi_1193at 1231.593 kb on + strand, within Dshi_1193at 1231.739 kb on - strand, within Dshi_1193at 1231.748 kb on - strand, within Dshi_1193at 1232.003 kb on + strandat 1232.413 kb on - strand, within Dshi_1194at 1232.441 kb on + strand, within Dshi_1194at 1232.568 kb on + strand, within Dshi_1194at 1232.579 kb on + strand, within Dshi_1194at 1232.603 kb on + strand, within Dshi_1194at 1232.638 kb on + strand, within Dshi_1194at 1232.860 kb on + strand, within Dshi_1194at 1233.160 kb on + strand, within Dshi_1194at 1233.284 kb on + strand, within Dshi_1194at 1233.304 kb on + strand, within Dshi_1194at 1233.304 kb on + strand, within Dshi_1194at 1233.539 kb on - strand, within Dshi_1194at 1233.725 kb on - strand, within Dshi_1194at 1234.190 kb on - strandat 1234.442 kb on + strand, within Dshi_1195at 1234.769 kb on - strand, within Dshi_1195at 1235.004 kb on + strand, within Dshi_1195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,231,037 + Dshi_1193 0.26 -0.1
1,231,037 + Dshi_1193 0.26 -0.2
1,231,039 + Dshi_1193 0.26 +0.2
1,231,073 + Dshi_1193 0.29 -0.3
1,231,092 - Dshi_1193 0.30 -0.0
1,231,112 + Dshi_1193 0.32 -0.2
1,231,140 - Dshi_1193 0.34 +0.3
1,231,163 + Dshi_1193 0.36 -0.4
1,231,169 + Dshi_1193 0.37 -0.4
1,231,418 - Dshi_1193 0.58 -1.0
1,231,450 - Dshi_1193 0.61 -0.1
1,231,593 + Dshi_1193 0.73 -0.4
1,231,739 - Dshi_1193 0.85 -0.7
1,231,748 - Dshi_1193 0.86 -0.6
1,232,003 + -0.0
1,232,413 - Dshi_1194 0.22 +0.7
1,232,441 + Dshi_1194 0.24 +0.9
1,232,568 + Dshi_1194 0.29 +0.8
1,232,579 + Dshi_1194 0.30 +0.8
1,232,603 + Dshi_1194 0.31 +0.6
1,232,638 + Dshi_1194 0.33 +0.8
1,232,860 + Dshi_1194 0.43 -0.4
1,233,160 + Dshi_1194 0.56 +0.6
1,233,284 + Dshi_1194 0.62 +0.7
1,233,304 + Dshi_1194 0.62 +1.6
1,233,304 + Dshi_1194 0.62 -0.0
1,233,539 - Dshi_1194 0.73 +0.6
1,233,725 - Dshi_1194 0.81 -0.0
1,234,190 - +0.4
1,234,442 + Dshi_1195 0.20 -0.1
1,234,769 - Dshi_1195 0.53 +0.5
1,235,004 + Dshi_1195 0.77 +0.1

Or see this region's nucleotide sequence