Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1192

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1191 and Dshi_1192 are separated by 5 nucleotidesDshi_1192 and Dshi_1193 are separated by 246 nucleotides Dshi_1191: Dshi_1191 - Leucyl aminopeptidase (RefSeq), at 1,228,563 to 1,230,029 _1191 Dshi_1192: Dshi_1192 - DNA polymerase III chi subunit HolC (RefSeq), at 1,230,035 to 1,230,490 _1192 Dshi_1193: Dshi_1193 - cytochrome P450 (RefSeq), at 1,230,737 to 1,231,909 _1193 Position (kb) 1230 1231Strain fitness (log2 ratio) -2 -1 0 1at 1229.189 kb on - strand, within Dshi_1191at 1229.231 kb on - strand, within Dshi_1191at 1229.235 kb on + strand, within Dshi_1191at 1229.235 kb on + strand, within Dshi_1191at 1229.235 kb on + strand, within Dshi_1191at 1229.315 kb on + strand, within Dshi_1191at 1229.383 kb on - strand, within Dshi_1191at 1229.527 kb on + strand, within Dshi_1191at 1229.600 kb on - strand, within Dshi_1191at 1229.931 kb on + strandat 1229.931 kb on + strandat 1230.178 kb on + strand, within Dshi_1192at 1230.269 kb on - strand, within Dshi_1192at 1230.290 kb on + strand, within Dshi_1192at 1230.561 kb on - strandat 1231.037 kb on + strand, within Dshi_1193at 1231.037 kb on + strand, within Dshi_1193at 1231.039 kb on + strand, within Dshi_1193at 1231.073 kb on + strand, within Dshi_1193at 1231.092 kb on - strand, within Dshi_1193at 1231.112 kb on + strand, within Dshi_1193at 1231.140 kb on - strand, within Dshi_1193at 1231.163 kb on + strand, within Dshi_1193at 1231.169 kb on + strand, within Dshi_1193at 1231.418 kb on - strand, within Dshi_1193at 1231.450 kb on - strand, within Dshi_1193

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
remove
1,229,189 - Dshi_1191 0.43 +0.2
1,229,231 - Dshi_1191 0.46 +0.1
1,229,235 + Dshi_1191 0.46 +0.7
1,229,235 + Dshi_1191 0.46 +1.2
1,229,235 + Dshi_1191 0.46 -1.0
1,229,315 + Dshi_1191 0.51 -1.2
1,229,383 - Dshi_1191 0.56 +0.1
1,229,527 + Dshi_1191 0.66 +0.2
1,229,600 - Dshi_1191 0.71 -0.8
1,229,931 + +0.5
1,229,931 + -0.3
1,230,178 + Dshi_1192 0.31 -0.6
1,230,269 - Dshi_1192 0.51 -2.0
1,230,290 + Dshi_1192 0.56 -0.7
1,230,561 - -0.4
1,231,037 + Dshi_1193 0.26 -0.1
1,231,037 + Dshi_1193 0.26 -0.2
1,231,039 + Dshi_1193 0.26 +0.2
1,231,073 + Dshi_1193 0.29 -0.3
1,231,092 - Dshi_1193 0.30 -0.0
1,231,112 + Dshi_1193 0.32 -0.2
1,231,140 - Dshi_1193 0.34 +0.3
1,231,163 + Dshi_1193 0.36 -0.4
1,231,169 + Dshi_1193 0.37 -0.4
1,231,418 - Dshi_1193 0.58 -1.0
1,231,450 - Dshi_1193 0.61 -0.1

Or see this region's nucleotide sequence