Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1103

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1100 and Dshi_1101 are separated by 64 nucleotidesDshi_1101 and Dshi_1102 are separated by 76 nucleotidesDshi_1102 and Dshi_1103 are separated by 312 nucleotidesDshi_1103 and Dshi_1104 overlap by 4 nucleotidesDshi_1104 and Dshi_1105 are separated by 3 nucleotides Dshi_1100: Dshi_1100 - ribosomal L11 methyltransferase (RefSeq), at 1,128,118 to 1,128,987 _1100 Dshi_1101: Dshi_1101 - hypothetical protein (RefSeq), at 1,129,052 to 1,129,375 _1101 Dshi_1102: Dshi_1102 - protein of unknown function DUF1127 (RefSeq), at 1,129,452 to 1,129,649 _1102 Dshi_1103: Dshi_1103 - crossover junction endodeoxyribonuclease RuvC (RefSeq), at 1,129,962 to 1,130,492 _1103 Dshi_1104: Dshi_1104 - Holliday junction DNA helicase RuvA (RefSeq), at 1,130,489 to 1,131,163 _1104 Dshi_1105: Dshi_1105 - Holliday junction DNA helicase RuvB (RefSeq), at 1,131,167 to 1,132,240 _1105 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1at 1129.107 kb on - strand, within Dshi_1101at 1129.146 kb on - strand, within Dshi_1101at 1129.716 kb on + strandat 1129.724 kb on - strandat 1129.724 kb on - strandat 1129.783 kb on + strandat 1129.789 kb on - strandat 1129.789 kb on - strandat 1129.791 kb on - strandat 1129.827 kb on - strandat 1129.868 kb on - strandat 1129.898 kb on + strandat 1130.096 kb on - strand, within Dshi_1103at 1130.191 kb on + strand, within Dshi_1103at 1130.413 kb on + strand, within Dshi_1103at 1130.773 kb on + strand, within Dshi_1104at 1130.890 kb on + strand, within Dshi_1104

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,129,107 - Dshi_1101 0.17 +1.6
1,129,146 - Dshi_1101 0.29 +0.2
1,129,716 + +1.2
1,129,724 - -0.7
1,129,724 - +0.4
1,129,783 + -0.0
1,129,789 - +0.1
1,129,789 - -0.0
1,129,791 - -0.4
1,129,827 - +0.2
1,129,868 - -0.3
1,129,898 + +0.2
1,130,096 - Dshi_1103 0.25 +1.3
1,130,191 + Dshi_1103 0.43 -3.1
1,130,413 + Dshi_1103 0.85 -1.8
1,130,773 + Dshi_1104 0.42 -2.0
1,130,890 + Dshi_1104 0.59 -0.9

Or see this region's nucleotide sequence