Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1077

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1076 and Dshi_1077 are separated by 136 nucleotidesDshi_1077 and Dshi_1078 overlap by 1 nucleotides Dshi_1076: Dshi_1076 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 1,104,888 to 1,105,649 _1076 Dshi_1077: Dshi_1077 - phosphoribosylformylglycinamidine synthase, purS (RefSeq), at 1,105,786 to 1,106,016 _1077 Dshi_1078: Dshi_1078 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,106,016 to 1,107,053 _1078 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -3 -2 -1 0 1at 1104.829 kb on - strandat 1104.857 kb on + strandat 1104.870 kb on - strandat 1105.221 kb on + strand, within Dshi_1076at 1105.283 kb on - strand, within Dshi_1076at 1105.923 kb on + strand, within Dshi_1077at 1106.005 kb on + strandat 1106.065 kb on - strandat 1106.176 kb on - strand, within Dshi_1078at 1106.213 kb on + strand, within Dshi_1078at 1106.213 kb on + strand, within Dshi_1078at 1106.311 kb on - strand, within Dshi_1078at 1106.456 kb on + strand, within Dshi_1078at 1106.598 kb on - strand, within Dshi_1078at 1106.899 kb on + strand, within Dshi_1078at 1107.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,104,829 - -0.1
1,104,857 + +1.0
1,104,870 - -1.2
1,105,221 + Dshi_1076 0.44 -0.8
1,105,283 - Dshi_1076 0.52 +0.1
1,105,923 + Dshi_1077 0.59 -0.0
1,106,005 + -0.4
1,106,065 - +1.4
1,106,176 - Dshi_1078 0.15 -0.9
1,106,213 + Dshi_1078 0.19 +0.6
1,106,213 + Dshi_1078 0.19 -0.1
1,106,311 - Dshi_1078 0.28 -2.8
1,106,456 + Dshi_1078 0.42 +0.4
1,106,598 - Dshi_1078 0.56 +0.3
1,106,899 + Dshi_1078 0.85 -1.5
1,107,006 - +0.1

Or see this region's nucleotide sequence