Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0978

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0977 and Dshi_0978 overlap by 4 nucleotidesDshi_0978 and Dshi_0979 are separated by 60 nucleotides Dshi_0977: Dshi_0977 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 998,735 to 1,000,003 _0977 Dshi_0978: Dshi_0978 - hypothetical protein (RefSeq), at 1,000,000 to 1,000,476 _0978 Dshi_0979: Dshi_0979 - Histidinol dehydrogenase (RefSeq), at 1,000,537 to 1,001,853 _0979 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -1 0 1at 1000.124 kb on - strand, within Dshi_0978at 1000.144 kb on - strand, within Dshi_0978at 1000.186 kb on - strand, within Dshi_0978at 1000.271 kb on + strand, within Dshi_0978at 1000.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,000,124 - Dshi_0978 0.26 -1.1
1,000,144 - Dshi_0978 0.30 -0.7
1,000,186 - Dshi_0978 0.39 -0.8
1,000,271 + Dshi_0978 0.57 -1.6
1,000,439 + -0.4

Or see this region's nucleotide sequence