Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0890 and Dshi_0891 are separated by 93 nucleotides Dshi_0891 and Dshi_0892 are separated by 334 nucleotides
Dshi_0890: Dshi_0890 - Ornithine cyclodeaminase (RefSeq), at 905,581 to 906,573
_0890
Dshi_0891: Dshi_0891 - cysteine synthase A (RefSeq), at 906,667 to 907,749
_0891
Dshi_0892: Dshi_0892 - transposase IS4 family protein (RefSeq), at 908,084 to 909,016
_0892
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2 at 905.708 kb on - strand, within Dshi_0890 at 905.715 kb on - strand, within Dshi_0890 at 905.802 kb on - strand, within Dshi_0890 at 905.808 kb on + strand, within Dshi_0890 at 905.859 kb on + strand, within Dshi_0890 at 905.867 kb on - strand, within Dshi_0890 at 905.948 kb on + strand, within Dshi_0890 at 905.954 kb on - strand, within Dshi_0890 at 905.956 kb on - strand, within Dshi_0890 at 905.968 kb on - strand, within Dshi_0890 at 906.003 kb on + strand, within Dshi_0890 at 906.013 kb on + strand, within Dshi_0890 at 906.026 kb on + strand, within Dshi_0890 at 906.026 kb on - strand, within Dshi_0890 at 906.245 kb on + strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.281 kb on - strand, within Dshi_0890 at 906.324 kb on - strand, within Dshi_0890 at 906.468 kb on - strand, within Dshi_0890 at 906.501 kb on - strand at 906.512 kb on - strand at 906.747 kb on - strand at 906.755 kb on + strand at 906.776 kb on - strand, within Dshi_0891 at 907.089 kb on + strand, within Dshi_0891 at 907.097 kb on - strand, within Dshi_0891 at 907.187 kb on - strand, within Dshi_0891 at 907.189 kb on + strand, within Dshi_0891 at 907.194 kb on + strand, within Dshi_0891 at 907.244 kb on + strand, within Dshi_0891 at 907.310 kb on + strand, within Dshi_0891 at 907.323 kb on - strand, within Dshi_0891 at 907.400 kb on + strand, within Dshi_0891 at 907.448 kb on + strand, within Dshi_0891 at 907.455 kb on - strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.477 kb on - strand, within Dshi_0891 at 907.526 kb on + strand, within Dshi_0891 at 907.577 kb on - strand, within Dshi_0891 at 907.577 kb on - strand, within Dshi_0891 at 907.606 kb on - strand, within Dshi_0891 at 907.634 kb on - strand, within Dshi_0891 at 907.660 kb on + strand at 907.696 kb on + strand at 907.696 kb on + strand at 907.696 kb on + strand at 907.696 kb on + strand at 907.711 kb on - strand at 907.737 kb on + strand at 907.752 kb on - strand at 907.752 kb on - strand at 907.759 kb on + strand at 907.759 kb on - strand at 907.794 kb on + strand at 907.802 kb on - strand at 907.802 kb on - strand at 907.802 kb on - strand at 907.814 kb on + strand at 907.814 kb on + strand at 907.835 kb on - strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.874 kb on + strand at 907.896 kb on + strand at 907.912 kb on + strand at 907.920 kb on - strand at 907.922 kb on + strand at 907.922 kb on + strand at 907.927 kb on + strand at 907.930 kb on - strand at 907.968 kb on + strand at 907.989 kb on + strand at 907.989 kb on + strand at 907.989 kb on + strand at 907.989 kb on + strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 908.007 kb on - strand at 908.020 kb on + strand at 908.022 kb on - strand at 908.023 kb on - strand at 908.035 kb on + strand at 908.062 kb on + strand at 908.064 kb on + strand at 908.069 kb on + strand at 908.069 kb on + strand at 908.069 kb on + strand at 908.074 kb on + strand at 908.077 kb on - strand at 908.077 kb on - strand at 908.077 kb on - strand at 908.086 kb on + strand at 908.086 kb on + strand at 908.086 kb on + strand at 908.094 kb on - strand at 908.094 kb on - strand at 908.107 kb on - strand at 908.115 kb on + strand at 908.115 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.127 kb on - strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.132 kb on - strand at 908.132 kb on - strand at 908.137 kb on - strand at 908.137 kb on - strand at 908.149 kb on + strand at 908.149 kb on + strand at 908.152 kb on - strand at 908.157 kb on + strand at 908.157 kb on - strand at 908.159 kb on - strand at 908.167 kb on + strand at 908.167 kb on + strand at 908.175 kb on - strand at 908.180 kb on - strand, within Dshi_0892 at 908.218 kb on + strand, within Dshi_0892 at 908.218 kb on - strand, within Dshi_0892 at 908.228 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.257 kb on - strand, within Dshi_0892 at 908.259 kb on + strand, within Dshi_0892 at 908.265 kb on + strand, within Dshi_0892 at 908.272 kb on + strand, within Dshi_0892 at 908.272 kb on + strand, within Dshi_0892 at 908.280 kb on - strand, within Dshi_0892 at 908.283 kb on + strand, within Dshi_0892 at 908.309 kb on - strand, within Dshi_0892 at 908.344 kb on - strand, within Dshi_0892 at 908.359 kb on - strand, within Dshi_0892 at 908.405 kb on + strand, within Dshi_0892 at 908.413 kb on - strand, within Dshi_0892 at 908.446 kb on - strand, within Dshi_0892 at 908.494 kb on + strand, within Dshi_0892 at 908.503 kb on - strand, within Dshi_0892 at 908.521 kb on + strand, within Dshi_0892 at 908.526 kb on + strand, within Dshi_0892 at 908.537 kb on + strand, within Dshi_0892 at 908.594 kb on + strand, within Dshi_0892 at 908.599 kb on + strand, within Dshi_0892 at 908.619 kb on + strand, within Dshi_0892 at 908.641 kb on - strand, within Dshi_0892 at 908.655 kb on - strand, within Dshi_0892 at 908.714 kb on - strand, within Dshi_0892
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 905,708 - Dshi_0890 0.13 +0.7 905,715 - Dshi_0890 0.13 +0.0 905,802 - Dshi_0890 0.22 +0.0 905,808 + Dshi_0890 0.23 -0.6 905,859 + Dshi_0890 0.28 -0.0 905,867 - Dshi_0890 0.29 +0.2 905,948 + Dshi_0890 0.37 +0.8 905,954 - Dshi_0890 0.38 +0.2 905,956 - Dshi_0890 0.38 -0.2 905,968 - Dshi_0890 0.39 +0.2 906,003 + Dshi_0890 0.42 -0.1 906,013 + Dshi_0890 0.44 +0.5 906,026 + Dshi_0890 0.45 +0.6 906,026 - Dshi_0890 0.45 -0.7 906,245 + Dshi_0890 0.67 -0.6 906,258 - Dshi_0890 0.68 +0.6 906,258 - Dshi_0890 0.68 -1.4 906,258 - Dshi_0890 0.68 -2.3 906,281 - Dshi_0890 0.70 -1.0 906,324 - Dshi_0890 0.75 -0.6 906,468 - Dshi_0890 0.89 -0.0 906,501 - +0.1 906,512 - +0.1 906,747 - -0.1 906,755 + -1.1 906,776 - Dshi_0891 0.10 -0.1 907,089 + Dshi_0891 0.39 -1.0 907,097 - Dshi_0891 0.40 -0.6 907,187 - Dshi_0891 0.48 -0.3 907,189 + Dshi_0891 0.48 +1.8 907,194 + Dshi_0891 0.49 -1.5 907,244 + Dshi_0891 0.53 -0.2 907,310 + Dshi_0891 0.59 -0.8 907,323 - Dshi_0891 0.61 -0.7 907,400 + Dshi_0891 0.68 +0.8 907,448 + Dshi_0891 0.72 -0.7 907,455 - Dshi_0891 0.73 -1.7 907,468 + Dshi_0891 0.74 -0.6 907,468 + Dshi_0891 0.74 -0.8 907,477 - Dshi_0891 0.75 -0.3 907,526 + Dshi_0891 0.79 +0.9 907,577 - Dshi_0891 0.84 +0.3 907,577 - Dshi_0891 0.84 -1.2 907,606 - Dshi_0891 0.87 -0.2 907,634 - Dshi_0891 0.89 -1.4 907,660 + -1.3 907,696 + +0.1 907,696 + -0.8 907,696 + -2.3 907,696 + -0.1 907,711 - -0.8 907,737 + -0.6 907,752 - -0.9 907,752 - +0.3 907,759 + -0.7 907,759 - +0.7 907,794 + +0.2 907,802 - +1.6 907,802 - +0.3 907,802 - -1.6 907,814 + -0.6 907,814 + +0.7 907,835 - -1.2 907,849 + +0.2 907,849 + -0.3 907,849 + -1.2 907,849 + +0.3 907,849 + +0.3 907,849 + -0.3 907,849 + -0.3 907,849 + +0.3 907,849 + +0.9 907,849 + +1.5 907,849 + -0.6 907,849 + -1.5 907,849 + +0.2 907,849 + +0.2 907,849 + +0.3 907,849 + +0.3 907,857 - -0.1 907,857 - +0.3 907,857 - +0.9 907,857 - -0.6 907,857 - -0.8 907,857 - +0.0 907,857 - +0.4 907,857 - -1.3 907,857 - -0.3 907,857 - -0.7 907,857 - +0.5 907,857 - +1.6 907,857 - +0.1 907,857 - -0.1 907,857 - -0.8 907,857 - +1.5 907,864 + -0.3 907,864 + -1.8 907,864 + +0.0 907,864 + -0.1 907,864 + +0.0 907,864 + -0.3 907,864 + +0.6 907,864 + -1.0 907,864 + -0.5 907,864 + +0.5 907,864 + +0.0 907,864 + -0.2 907,864 + -0.6 907,864 + +0.6 907,864 + +0.3 907,864 + +0.8 907,864 + +1.6 907,864 + -1.5 907,864 + +0.6 907,864 + +0.6 907,864 + -0.2 907,864 + -0.1 907,864 + -1.0 907,864 + +1.0 907,864 + +0.8 907,864 + +0.6 907,864 + -0.8 907,864 + +0.7 907,864 + -0.1 907,864 + -0.6 907,864 + -1.2 907,872 - +1.0 907,872 - +0.6 907,872 - +0.7 907,872 - -0.1 907,872 - -0.5 907,872 - -0.6 907,872 - -0.3 907,872 - -0.7 907,872 - +0.5 907,872 - +0.5 907,872 - -0.0 907,874 + +0.6 907,896 + +0.5 907,912 + +1.0 907,920 - -0.5 907,922 + +1.3 907,922 + +0.6 907,927 + +1.5 907,930 - -0.2 907,968 + +0.5 907,989 + -0.9 907,989 + +1.3 907,989 + -0.7 907,989 + +0.2 907,997 - +1.0 907,997 - +0.8 907,997 - -0.3 907,997 - +1.0 907,997 - +0.0 907,997 - -0.8 908,007 - +0.5 908,020 + -1.0 908,022 - +2.0 908,023 - -2.5 908,035 + -0.3 908,062 + +0.9 908,064 + -0.9 908,069 + +0.3 908,069 + -0.7 908,069 + -0.3 908,074 + +0.8 908,077 - +0.9 908,077 - +0.3 908,077 - +0.1 908,086 + -0.9 908,086 + +1.1 908,086 + +0.6 908,094 - -0.5 908,094 - +0.5 908,107 - +0.1 908,115 + +0.5 908,115 + +0.7 908,124 + -0.7 908,124 + +0.6 908,124 + -1.8 908,124 + +0.9 908,124 + -2.5 908,124 + -0.3 908,127 - -0.2 908,129 + +1.7 908,129 + +0.2 908,129 + -1.2 908,129 + -0.5 908,129 + +0.4 908,132 - -0.6 908,132 - +0.6 908,137 - -0.1 908,137 - -1.3 908,149 + -0.3 908,149 + +0.6 908,152 - +0.5 908,157 + -0.5 908,157 - -1.0 908,159 - +0.1 908,167 + -0.5 908,167 + -0.1 908,175 - -0.2 908,180 - Dshi_0892 0.10 +0.3 908,218 + Dshi_0892 0.14 +0.8 908,218 - Dshi_0892 0.14 +0.9 908,228 + Dshi_0892 0.15 +0.1 908,249 + Dshi_0892 0.18 -0.3 908,249 + Dshi_0892 0.18 +0.4 908,249 + Dshi_0892 0.18 +1.2 908,249 + Dshi_0892 0.18 -0.1 908,257 - Dshi_0892 0.19 -2.0 908,259 + Dshi_0892 0.19 +0.4 908,265 + Dshi_0892 0.19 +1.3 908,272 + Dshi_0892 0.20 +0.1 908,272 + Dshi_0892 0.20 +1.5 908,280 - Dshi_0892 0.21 +1.0 908,283 + Dshi_0892 0.21 +0.1 908,309 - Dshi_0892 0.24 -0.6 908,344 - Dshi_0892 0.28 -1.0 908,359 - Dshi_0892 0.29 -0.4 908,405 + Dshi_0892 0.34 -0.0 908,413 - Dshi_0892 0.35 +1.1 908,446 - Dshi_0892 0.39 -0.7 908,494 + Dshi_0892 0.44 +0.1 908,503 - Dshi_0892 0.45 -0.7 908,521 + Dshi_0892 0.47 +0.4 908,526 + Dshi_0892 0.47 +1.5 908,537 + Dshi_0892 0.49 +0.6 908,594 + Dshi_0892 0.55 -0.7 908,599 + Dshi_0892 0.55 -2.2 908,619 + Dshi_0892 0.57 +0.6 908,641 - Dshi_0892 0.60 +1.0 908,655 - Dshi_0892 0.61 +0.4 908,714 - Dshi_0892 0.68 -0.7
Or see this region's nucleotide sequence