Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0835

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0834 and Dshi_0835 are separated by 56 nucleotidesDshi_0835 and Dshi_0836 are separated by 5 nucleotides Dshi_0834: Dshi_0834 - protein of unknown function DUF6 transmembrane (RefSeq), at 843,077 to 843,994 _0834 Dshi_0835: Dshi_0835 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 844,051 to 846,264 _0835 Dshi_0836: Dshi_0836 - acetyl-CoA acetyltransferase (RefSeq), at 846,270 to 847,481 _0836 Position (kb) 844 845 846 847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 843.051 kb on + strandat 843.121 kb on - strandat 843.191 kb on + strand, within Dshi_0834at 843.240 kb on - strand, within Dshi_0834at 843.591 kb on + strand, within Dshi_0834at 843.668 kb on + strand, within Dshi_0834at 843.687 kb on - strand, within Dshi_0834at 843.827 kb on + strand, within Dshi_0834at 844.203 kb on + strandat 844.301 kb on - strand, within Dshi_0835at 844.307 kb on - strand, within Dshi_0835at 844.316 kb on + strand, within Dshi_0835at 844.367 kb on + strand, within Dshi_0835at 844.406 kb on + strand, within Dshi_0835at 844.416 kb on + strand, within Dshi_0835at 844.547 kb on + strand, within Dshi_0835at 844.817 kb on + strand, within Dshi_0835at 844.879 kb on - strand, within Dshi_0835at 844.889 kb on - strand, within Dshi_0835at 844.898 kb on + strand, within Dshi_0835at 845.093 kb on - strand, within Dshi_0835at 845.173 kb on + strand, within Dshi_0835at 845.181 kb on - strand, within Dshi_0835at 845.223 kb on - strand, within Dshi_0835at 845.292 kb on + strand, within Dshi_0835at 845.570 kb on + strand, within Dshi_0835at 845.654 kb on + strand, within Dshi_0835at 845.734 kb on - strand, within Dshi_0835at 846.004 kb on + strand, within Dshi_0835at 846.358 kb on - strandat 846.360 kb on + strandat 846.455 kb on + strand, within Dshi_0836at 846.492 kb on - strand, within Dshi_0836at 846.506 kb on + strand, within Dshi_0836at 846.569 kb on + strand, within Dshi_0836at 846.627 kb on - strand, within Dshi_0836at 846.820 kb on - strand, within Dshi_0836at 846.890 kb on - strand, within Dshi_0836at 846.938 kb on - strand, within Dshi_0836at 846.967 kb on + strand, within Dshi_0836at 847.035 kb on - strand, within Dshi_0836at 847.076 kb on - strand, within Dshi_0836at 847.229 kb on + strand, within Dshi_0836

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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843,051 + -2.0
843,121 - +1.0
843,191 + Dshi_0834 0.12 +0.0
843,240 - Dshi_0834 0.18 -0.0
843,591 + Dshi_0834 0.56 +1.4
843,668 + Dshi_0834 0.64 +0.2
843,687 - Dshi_0834 0.66 +0.3
843,827 + Dshi_0834 0.82 +0.4
844,203 + -0.3
844,301 - Dshi_0835 0.11 +0.0
844,307 - Dshi_0835 0.12 -0.4
844,316 + Dshi_0835 0.12 +0.5
844,367 + Dshi_0835 0.14 +2.0
844,406 + Dshi_0835 0.16 -1.3
844,416 + Dshi_0835 0.16 -1.1
844,547 + Dshi_0835 0.22 -4.2
844,817 + Dshi_0835 0.35 +0.1
844,879 - Dshi_0835 0.37 -3.5
844,889 - Dshi_0835 0.38 -0.3
844,898 + Dshi_0835 0.38 -0.3
845,093 - Dshi_0835 0.47 +0.5
845,173 + Dshi_0835 0.51 +0.7
845,181 - Dshi_0835 0.51 -0.7
845,223 - Dshi_0835 0.53 -0.2
845,292 + Dshi_0835 0.56 -0.3
845,570 + Dshi_0835 0.69 -1.7
845,654 + Dshi_0835 0.72 -0.6
845,734 - Dshi_0835 0.76 -1.3
846,004 + Dshi_0835 0.88 -1.7
846,358 - -0.6
846,360 + -0.6
846,455 + Dshi_0836 0.15 -1.3
846,492 - Dshi_0836 0.18 -1.2
846,506 + Dshi_0836 0.19 -0.6
846,569 + Dshi_0836 0.25 +0.1
846,627 - Dshi_0836 0.29 -2.7
846,820 - Dshi_0836 0.45 -0.7
846,890 - Dshi_0836 0.51 -0.8
846,938 - Dshi_0836 0.55 +1.5
846,967 + Dshi_0836 0.58 -0.4
847,035 - Dshi_0836 0.63 -1.2
847,076 - Dshi_0836 0.67 +1.0
847,229 + Dshi_0836 0.79 -1.6

Or see this region's nucleotide sequence