Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0753

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0751 and Dshi_0752 are separated by 42 nucleotidesDshi_0752 and Dshi_0753 overlap by 13 nucleotidesDshi_0753 and Dshi_0754 are separated by 9 nucleotidesDshi_0754 and Dshi_0755 are separated by 41 nucleotides Dshi_0751: Dshi_0751 - protein of unknown function DUF344 (RefSeq), at 761,970 to 762,914 _0751 Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637 _0752 Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581 _0753 Dshi_0754: Dshi_0754 - Methyltransferase type 11 (RefSeq), at 764,591 to 765,187 _0754 Dshi_0755: Dshi_0755 - MATE efflux family protein (RefSeq), at 765,229 to 766,599 _0755 Position (kb) 763 764 765Strain fitness (log2 ratio) -2 -1 0 1at 762.662 kb on + strand, within Dshi_0751at 762.664 kb on - strand, within Dshi_0751at 762.713 kb on - strand, within Dshi_0751at 762.803 kb on - strand, within Dshi_0751at 762.846 kb on - strandat 762.864 kb on + strandat 762.880 kb on - strandat 762.984 kb on + strandat 762.986 kb on + strandat 762.986 kb on + strandat 763.094 kb on + strand, within Dshi_0752at 763.170 kb on - strand, within Dshi_0752at 763.219 kb on - strand, within Dshi_0752at 763.342 kb on + strand, within Dshi_0752at 763.381 kb on + strand, within Dshi_0752at 763.606 kb on + strandat 764.018 kb on + strand, within Dshi_0753at 764.130 kb on - strand, within Dshi_0753at 764.187 kb on + strand, within Dshi_0753at 764.637 kb on + strandat 764.673 kb on + strand, within Dshi_0754at 764.674 kb on - strand, within Dshi_0754at 764.703 kb on + strand, within Dshi_0754at 764.865 kb on - strand, within Dshi_0754at 764.923 kb on + strand, within Dshi_0754at 765.214 kb on + strandat 765.421 kb on + strand, within Dshi_0755at 765.456 kb on + strand, within Dshi_0755at 765.463 kb on + strand, within Dshi_0755

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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762,662 + Dshi_0751 0.73 -0.7
762,664 - Dshi_0751 0.73 +1.0
762,713 - Dshi_0751 0.79 +0.4
762,803 - Dshi_0751 0.88 -0.0
762,846 - +1.4
762,864 + -0.3
762,880 - -1.1
762,984 + +0.0
762,986 + -0.3
762,986 + -0.2
763,094 + Dshi_0752 0.20 +1.2
763,170 - Dshi_0752 0.31 +0.6
763,219 - Dshi_0752 0.38 +0.3
763,342 + Dshi_0752 0.57 +0.1
763,381 + Dshi_0752 0.62 -2.5
763,606 + +0.5
764,018 + Dshi_0753 0.41 -1.7
764,130 - Dshi_0753 0.53 -0.3
764,187 + Dshi_0753 0.59 -1.2
764,637 + +1.1
764,673 + Dshi_0754 0.14 +0.2
764,674 - Dshi_0754 0.14 -0.1
764,703 + Dshi_0754 0.19 -0.0
764,865 - Dshi_0754 0.46 -0.4
764,923 + Dshi_0754 0.56 -0.2
765,214 + -0.6
765,421 + Dshi_0755 0.14 -0.1
765,456 + Dshi_0755 0.17 +0.0
765,463 + Dshi_0755 0.17 -1.7

Or see this region's nucleotide sequence