Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0676

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0675 and Dshi_0676 are separated by 138 nucleotidesDshi_0676 and Dshi_0677 are separated by 12 nucleotidesDshi_0677 and Dshi_0678 are separated by 113 nucleotides Dshi_0675: Dshi_0675 - gamma-glutamyltransferase (RefSeq), at 679,714 to 681,504 _0675 Dshi_0676: Dshi_0676 - beta-lactamase (RefSeq), at 681,643 to 683,742 _0676 Dshi_0677: Dshi_0677 - hypothetical protein (RefSeq), at 683,755 to 684,570 _0677 Dshi_0678: Dshi_0678 - glycosyl transferase family 14 (RefSeq), at 684,684 to 686,261 _0678 Position (kb) 681 682 683 684Strain fitness (log2 ratio) -2 -1 0 1 2at 680.683 kb on - strand, within Dshi_0675at 680.773 kb on - strand, within Dshi_0675at 680.866 kb on + strand, within Dshi_0675at 680.868 kb on - strand, within Dshi_0675at 680.873 kb on - strand, within Dshi_0675at 680.936 kb on - strand, within Dshi_0675at 680.948 kb on + strand, within Dshi_0675at 681.006 kb on + strand, within Dshi_0675at 681.014 kb on - strand, within Dshi_0675at 681.032 kb on + strand, within Dshi_0675at 681.032 kb on + strand, within Dshi_0675at 681.074 kb on - strand, within Dshi_0675at 681.074 kb on - strand, within Dshi_0675at 681.348 kb on + strandat 681.393 kb on - strandat 681.419 kb on + strandat 681.419 kb on + strandat 681.420 kb on - strandat 681.427 kb on - strandat 681.472 kb on - strandat 681.477 kb on + strandat 681.506 kb on - strandat 681.511 kb on - strandat 681.545 kb on - strandat 681.549 kb on + strandat 681.630 kb on + strandat 681.638 kb on - strandat 681.689 kb on - strandat 681.689 kb on - strandat 681.691 kb on + strandat 681.697 kb on + strandat 681.702 kb on + strandat 681.788 kb on + strandat 681.814 kb on - strandat 681.957 kb on + strand, within Dshi_0676at 681.992 kb on + strand, within Dshi_0676at 681.992 kb on + strand, within Dshi_0676at 682.000 kb on - strand, within Dshi_0676at 682.000 kb on - strand, within Dshi_0676at 682.000 kb on - strand, within Dshi_0676at 682.000 kb on - strand, within Dshi_0676at 682.074 kb on + strand, within Dshi_0676at 682.179 kb on - strand, within Dshi_0676at 682.247 kb on - strand, within Dshi_0676at 682.294 kb on - strand, within Dshi_0676at 682.343 kb on - strand, within Dshi_0676at 682.576 kb on - strand, within Dshi_0676at 682.600 kb on + strand, within Dshi_0676at 682.645 kb on + strand, within Dshi_0676at 682.704 kb on - strand, within Dshi_0676at 682.773 kb on - strand, within Dshi_0676at 683.001 kb on + strand, within Dshi_0676at 683.102 kb on + strand, within Dshi_0676at 683.136 kb on - strand, within Dshi_0676at 683.219 kb on + strand, within Dshi_0676at 683.227 kb on - strand, within Dshi_0676at 683.237 kb on - strand, within Dshi_0676at 683.371 kb on + strand, within Dshi_0676at 683.438 kb on + strand, within Dshi_0676at 683.473 kb on + strand, within Dshi_0676at 683.554 kb on - strandat 683.600 kb on + strandat 683.753 kb on + strandat 683.753 kb on + strandat 683.758 kb on + strandat 683.761 kb on - strandat 683.801 kb on - strandat 684.015 kb on - strand, within Dshi_0677at 684.088 kb on + strand, within Dshi_0677at 684.217 kb on - strand, within Dshi_0677at 684.232 kb on - strand, within Dshi_0677at 684.236 kb on - strand, within Dshi_0677at 684.245 kb on + strand, within Dshi_0677at 684.252 kb on + strand, within Dshi_0677at 684.272 kb on + strand, within Dshi_0677at 684.295 kb on - strand, within Dshi_0677at 684.315 kb on + strand, within Dshi_0677at 684.322 kb on + strand, within Dshi_0677at 684.323 kb on - strand, within Dshi_0677at 684.330 kb on - strand, within Dshi_0677at 684.402 kb on - strand, within Dshi_0677at 684.470 kb on + strand, within Dshi_0677at 684.484 kb on - strand, within Dshi_0677at 684.506 kb on + strandat 684.529 kb on - strandat 684.575 kb on + strandat 684.583 kb on - strandat 684.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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680,683 - Dshi_0675 0.54 +0.8
680,773 - Dshi_0675 0.59 +0.2
680,866 + Dshi_0675 0.64 +0.8
680,868 - Dshi_0675 0.64 -1.1
680,873 - Dshi_0675 0.65 -0.8
680,936 - Dshi_0675 0.68 +0.3
680,948 + Dshi_0675 0.69 +1.2
681,006 + Dshi_0675 0.72 +2.0
681,014 - Dshi_0675 0.73 -0.0
681,032 + Dshi_0675 0.74 -0.6
681,032 + Dshi_0675 0.74 +0.2
681,074 - Dshi_0675 0.76 -0.2
681,074 - Dshi_0675 0.76 +1.6
681,348 + -0.3
681,393 - -0.5
681,419 + -0.2
681,419 + +0.9
681,420 - +0.1
681,427 - -1.5
681,472 - +0.4
681,477 + -0.8
681,506 - +1.7
681,511 - -2.2
681,545 - +0.7
681,549 + -0.7
681,630 + +1.7
681,638 - +0.1
681,689 - -0.8
681,689 - -1.3
681,691 + +0.8
681,697 + -0.4
681,702 + +0.7
681,788 + +0.5
681,814 - -0.1
681,957 + Dshi_0676 0.15 +0.8
681,992 + Dshi_0676 0.17 +0.2
681,992 + Dshi_0676 0.17 +0.9
682,000 - Dshi_0676 0.17 -0.1
682,000 - Dshi_0676 0.17 +0.8
682,000 - Dshi_0676 0.17 -0.5
682,000 - Dshi_0676 0.17 +0.2
682,074 + Dshi_0676 0.21 -0.0
682,179 - Dshi_0676 0.26 +0.5
682,247 - Dshi_0676 0.29 +1.2
682,294 - Dshi_0676 0.31 -0.0
682,343 - Dshi_0676 0.33 +0.3
682,576 - Dshi_0676 0.44 -0.2
682,600 + Dshi_0676 0.46 +0.0
682,645 + Dshi_0676 0.48 -0.2
682,704 - Dshi_0676 0.51 -0.8
682,773 - Dshi_0676 0.54 +1.0
683,001 + Dshi_0676 0.65 -0.1
683,102 + Dshi_0676 0.69 +1.5
683,136 - Dshi_0676 0.71 +0.6
683,219 + Dshi_0676 0.75 +0.2
683,227 - Dshi_0676 0.75 +1.8
683,237 - Dshi_0676 0.76 -0.4
683,371 + Dshi_0676 0.82 -0.1
683,438 + Dshi_0676 0.85 -2.5
683,473 + Dshi_0676 0.87 +2.1
683,554 - -0.9
683,600 + -0.1
683,753 + +1.8
683,753 + +1.3
683,758 + -0.9
683,761 - +0.3
683,801 - +0.5
684,015 - Dshi_0677 0.32 +0.8
684,088 + Dshi_0677 0.41 -0.6
684,217 - Dshi_0677 0.57 -1.3
684,232 - Dshi_0677 0.58 -0.1
684,236 - Dshi_0677 0.59 -0.7
684,245 + Dshi_0677 0.60 +1.1
684,252 + Dshi_0677 0.61 +0.1
684,272 + Dshi_0677 0.63 +0.2
684,295 - Dshi_0677 0.66 -0.8
684,315 + Dshi_0677 0.69 +1.2
684,322 + Dshi_0677 0.69 +0.5
684,323 - Dshi_0677 0.70 -0.5
684,330 - Dshi_0677 0.70 -0.8
684,402 - Dshi_0677 0.79 -0.1
684,470 + Dshi_0677 0.88 +0.3
684,484 - Dshi_0677 0.89 -0.4
684,506 + -0.7
684,529 - -0.6
684,575 + -0.8
684,583 - +0.6
684,710 - +0.9

Or see this region's nucleotide sequence