Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0468 and Dshi_0469 overlap by 4 nucleotides Dshi_0469 and Dshi_0470 are separated by 63 nucleotides Dshi_0470 and Dshi_0471 are separated by 62 nucleotides
Dshi_0468: Dshi_0468 - hypothetical protein (RefSeq), at 454,509 to 455,171
_0468
Dshi_0469: Dshi_0469 - hypothetical protein (RefSeq), at 455,168 to 455,518
_0469
Dshi_0470: Dshi_0470 - Sulphur oxidation protein SoxZ (RefSeq), at 455,582 to 456,454
_0470
Dshi_0471: Dshi_0471 - beta-lactamase domain protein (RefSeq), at 456,517 to 457,557
_0471
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 454.594 kb on + strand, within Dshi_0468 at 454.612 kb on + strand, within Dshi_0468 at 454.621 kb on - strand, within Dshi_0468 at 454.642 kb on + strand, within Dshi_0468 at 454.642 kb on + strand, within Dshi_0468 at 454.676 kb on - strand, within Dshi_0468 at 454.719 kb on + strand, within Dshi_0468 at 454.726 kb on + strand, within Dshi_0468 at 454.760 kb on - strand, within Dshi_0468 at 454.798 kb on - strand, within Dshi_0468 at 454.806 kb on - strand, within Dshi_0468 at 454.814 kb on + strand, within Dshi_0468 at 454.819 kb on + strand, within Dshi_0468 at 454.880 kb on - strand, within Dshi_0468 at 454.884 kb on - strand, within Dshi_0468 at 454.911 kb on - strand, within Dshi_0468 at 454.927 kb on + strand, within Dshi_0468 at 454.984 kb on - strand, within Dshi_0468 at 454.984 kb on - strand, within Dshi_0468 at 455.065 kb on + strand, within Dshi_0468 at 455.073 kb on - strand, within Dshi_0468 at 455.073 kb on - strand, within Dshi_0468 at 455.074 kb on - strand, within Dshi_0468 at 455.074 kb on - strand, within Dshi_0468 at 455.084 kb on - strand, within Dshi_0468 at 455.084 kb on - strand, within Dshi_0468 at 455.102 kb on + strand, within Dshi_0468 at 455.102 kb on + strand, within Dshi_0468 at 455.110 kb on - strand at 455.132 kb on - strand at 455.145 kb on - strand at 455.153 kb on + strand at 455.281 kb on - strand, within Dshi_0469 at 455.287 kb on - strand, within Dshi_0469 at 455.373 kb on - strand, within Dshi_0469 at 455.383 kb on - strand, within Dshi_0469 at 455.413 kb on + strand, within Dshi_0469 at 455.421 kb on - strand, within Dshi_0469 at 455.487 kb on - strand at 455.487 kb on - strand at 455.494 kb on - strand at 455.511 kb on + strand at 455.639 kb on + strand at 455.729 kb on + strand, within Dshi_0470 at 455.763 kb on - strand, within Dshi_0470 at 455.791 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.865 kb on + strand, within Dshi_0470 at 455.908 kb on + strand, within Dshi_0470 at 455.921 kb on - strand, within Dshi_0470 at 456.036 kb on - strand, within Dshi_0470 at 456.043 kb on - strand, within Dshi_0470 at 456.072 kb on + strand, within Dshi_0470 at 456.075 kb on + strand, within Dshi_0470 at 456.082 kb on - strand, within Dshi_0470 at 456.093 kb on - strand, within Dshi_0470 at 456.170 kb on - strand, within Dshi_0470 at 456.190 kb on - strand, within Dshi_0470 at 456.218 kb on - strand, within Dshi_0470 at 456.225 kb on + strand, within Dshi_0470 at 456.261 kb on - strand, within Dshi_0470 at 456.346 kb on - strand, within Dshi_0470 at 456.411 kb on + strand at 456.424 kb on - strand at 456.473 kb on + strand at 456.496 kb on + strand at 456.501 kb on + strand at 456.506 kb on + strand at 456.536 kb on + strand at 456.544 kb on - strand at 456.544 kb on - strand at 456.587 kb on + strand at 456.632 kb on - strand, within Dshi_0471 at 456.653 kb on + strand, within Dshi_0471 at 456.661 kb on - strand, within Dshi_0471 at 456.672 kb on - strand, within Dshi_0471 at 456.696 kb on + strand, within Dshi_0471 at 456.731 kb on - strand, within Dshi_0471 at 456.744 kb on + strand, within Dshi_0471 at 456.893 kb on + strand, within Dshi_0471 at 456.970 kb on + strand, within Dshi_0471 at 456.981 kb on + strand, within Dshi_0471 at 456.988 kb on + strand, within Dshi_0471 at 457.004 kb on + strand, within Dshi_0471 at 457.124 kb on + strand, within Dshi_0471 at 457.132 kb on - strand, within Dshi_0471 at 457.134 kb on + strand, within Dshi_0471 at 457.142 kb on - strand, within Dshi_0471 at 457.169 kb on + strand, within Dshi_0471 at 457.173 kb on + strand, within Dshi_0471 at 457.177 kb on - strand, within Dshi_0471 at 457.248 kb on + strand, within Dshi_0471 at 457.248 kb on + strand, within Dshi_0471 at 457.263 kb on + strand, within Dshi_0471 at 457.291 kb on + strand, within Dshi_0471 at 457.325 kb on + strand, within Dshi_0471 at 457.338 kb on - strand, within Dshi_0471 at 457.351 kb on + strand, within Dshi_0471 at 457.351 kb on + strand, within Dshi_0471 at 457.351 kb on + strand, within Dshi_0471
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 454,594 + Dshi_0468 0.13 +0.9 454,612 + Dshi_0468 0.16 +0.3 454,621 - Dshi_0468 0.17 -0.1 454,642 + Dshi_0468 0.20 +0.1 454,642 + Dshi_0468 0.20 -0.7 454,676 - Dshi_0468 0.25 +2.8 454,719 + Dshi_0468 0.32 +0.1 454,726 + Dshi_0468 0.33 -1.7 454,760 - Dshi_0468 0.38 -0.3 454,798 - Dshi_0468 0.44 -0.3 454,806 - Dshi_0468 0.45 +0.3 454,814 + Dshi_0468 0.46 -0.3 454,819 + Dshi_0468 0.47 -1.2 454,880 - Dshi_0468 0.56 -1.1 454,884 - Dshi_0468 0.57 -1.2 454,911 - Dshi_0468 0.61 -0.9 454,927 + Dshi_0468 0.63 +0.7 454,984 - Dshi_0468 0.72 +0.6 454,984 - Dshi_0468 0.72 -0.5 455,065 + Dshi_0468 0.84 -0.2 455,073 - Dshi_0468 0.85 -0.5 455,073 - Dshi_0468 0.85 -1.0 455,074 - Dshi_0468 0.85 -0.7 455,074 - Dshi_0468 0.85 +0.6 455,084 - Dshi_0468 0.87 -0.0 455,084 - Dshi_0468 0.87 +0.2 455,102 + Dshi_0468 0.89 -0.6 455,102 + Dshi_0468 0.89 -1.3 455,110 - +1.4 455,132 - +0.5 455,145 - -2.3 455,153 + -1.3 455,281 - Dshi_0469 0.32 +1.6 455,287 - Dshi_0469 0.34 +0.5 455,373 - Dshi_0469 0.58 -0.6 455,383 - Dshi_0469 0.61 -0.2 455,413 + Dshi_0469 0.70 -0.4 455,421 - Dshi_0469 0.72 +1.0 455,487 - -0.1 455,487 - +0.1 455,494 - +1.2 455,511 + +0.9 455,639 + +1.1 455,729 + Dshi_0470 0.17 -0.8 455,763 - Dshi_0470 0.21 -0.1 455,791 + Dshi_0470 0.24 -1.5 455,815 + Dshi_0470 0.27 -0.2 455,815 + Dshi_0470 0.27 +0.1 455,815 + Dshi_0470 0.27 +0.0 455,865 + Dshi_0470 0.32 -0.0 455,908 + Dshi_0470 0.37 -2.4 455,921 - Dshi_0470 0.39 +1.1 456,036 - Dshi_0470 0.52 -0.5 456,043 - Dshi_0470 0.53 -0.4 456,072 + Dshi_0470 0.56 -0.2 456,075 + Dshi_0470 0.56 -1.6 456,082 - Dshi_0470 0.57 -0.4 456,093 - Dshi_0470 0.59 -0.2 456,170 - Dshi_0470 0.67 -0.2 456,190 - Dshi_0470 0.70 -0.7 456,218 - Dshi_0470 0.73 -1.4 456,225 + Dshi_0470 0.74 +1.1 456,261 - Dshi_0470 0.78 +0.4 456,346 - Dshi_0470 0.88 +0.2 456,411 + -0.8 456,424 - -0.4 456,473 + +0.1 456,496 + -1.7 456,501 + -0.9 456,506 + -0.6 456,536 + +1.1 456,544 - +0.3 456,544 - -0.3 456,587 + +0.5 456,632 - Dshi_0471 0.11 -2.3 456,653 + Dshi_0471 0.13 -0.3 456,661 - Dshi_0471 0.14 +0.0 456,672 - Dshi_0471 0.15 -0.9 456,696 + Dshi_0471 0.17 -1.5 456,731 - Dshi_0471 0.21 -0.9 456,744 + Dshi_0471 0.22 -1.8 456,893 + Dshi_0471 0.36 -0.2 456,970 + Dshi_0471 0.44 +0.1 456,981 + Dshi_0471 0.45 +0.5 456,988 + Dshi_0471 0.45 +0.0 457,004 + Dshi_0471 0.47 -0.2 457,124 + Dshi_0471 0.58 +0.3 457,132 - Dshi_0471 0.59 +2.3 457,134 + Dshi_0471 0.59 -0.0 457,142 - Dshi_0471 0.60 -0.3 457,169 + Dshi_0471 0.63 -0.5 457,173 + Dshi_0471 0.63 -0.1 457,177 - Dshi_0471 0.63 +0.1 457,248 + Dshi_0471 0.70 -2.8 457,248 + Dshi_0471 0.70 -0.5 457,263 + Dshi_0471 0.72 -0.5 457,291 + Dshi_0471 0.74 +0.1 457,325 + Dshi_0471 0.78 +0.5 457,338 - Dshi_0471 0.79 +0.3 457,351 + Dshi_0471 0.80 +0.2 457,351 + Dshi_0471 0.80 -0.3 457,351 + Dshi_0471 0.80 -1.3
Or see this region's nucleotide sequence