Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0390

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0389 and Dshi_0390 are separated by 96 nucleotidesDshi_0390 and Dshi_6006 are separated by 753 nucleotides Dshi_0389: Dshi_0389 - Monosaccharide-transporting ATPase (RefSeq), at 370,545 to 371,618 _0389 Dshi_0390: Dshi_0390 - periplasmic binding protein/LacI transcriptional regulator (RefSeq), at 371,715 to 372,728 _0390 Dshi_6006: Dshi_6006 - 16SrRNA (RefSeq), at 373,482 to 374,943 _6006 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 370.780 kb on - strand, within Dshi_0389at 370.814 kb on - strand, within Dshi_0389at 370.833 kb on + strand, within Dshi_0389at 370.921 kb on + strand, within Dshi_0389at 371.147 kb on - strand, within Dshi_0389at 371.172 kb on - strand, within Dshi_0389at 371.274 kb on + strand, within Dshi_0389at 371.339 kb on + strand, within Dshi_0389at 371.354 kb on - strand, within Dshi_0389at 371.423 kb on - strand, within Dshi_0389at 371.428 kb on + strand, within Dshi_0389at 371.436 kb on - strand, within Dshi_0389at 371.491 kb on + strand, within Dshi_0389at 371.499 kb on - strand, within Dshi_0389at 371.536 kb on - strandat 371.540 kb on + strandat 371.568 kb on + strandat 371.571 kb on - strandat 371.571 kb on - strandat 371.597 kb on - strandat 371.614 kb on + strandat 371.622 kb on - strandat 371.729 kb on + strandat 371.739 kb on + strandat 371.822 kb on + strand, within Dshi_0390at 371.835 kb on - strand, within Dshi_0390at 371.875 kb on - strand, within Dshi_0390at 371.896 kb on + strand, within Dshi_0390at 371.940 kb on + strand, within Dshi_0390at 371.948 kb on - strand, within Dshi_0390at 371.976 kb on - strand, within Dshi_0390at 372.038 kb on + strand, within Dshi_0390at 372.046 kb on + strand, within Dshi_0390at 372.118 kb on - strand, within Dshi_0390at 372.137 kb on - strand, within Dshi_0390at 372.179 kb on - strand, within Dshi_0390at 372.395 kb on - strand, within Dshi_0390at 372.583 kb on + strand, within Dshi_0390at 372.591 kb on + strand, within Dshi_0390at 372.591 kb on - strand, within Dshi_0390at 372.642 kb on - strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.711 kb on - strandat 372.753 kb on + strandat 372.785 kb on + strandat 372.892 kb on + strandat 372.893 kb on - strandat 372.914 kb on - strandat 372.931 kb on + strandat 372.976 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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370,780 - Dshi_0389 0.22 -0.2
370,814 - Dshi_0389 0.25 +0.0
370,833 + Dshi_0389 0.27 -0.3
370,921 + Dshi_0389 0.35 +0.6
371,147 - Dshi_0389 0.56 +0.6
371,172 - Dshi_0389 0.58 +0.8
371,274 + Dshi_0389 0.68 -0.1
371,339 + Dshi_0389 0.74 +1.5
371,354 - Dshi_0389 0.75 +0.2
371,423 - Dshi_0389 0.82 +0.5
371,428 + Dshi_0389 0.82 +1.1
371,436 - Dshi_0389 0.83 -0.8
371,491 + Dshi_0389 0.88 -0.3
371,499 - Dshi_0389 0.89 -0.3
371,536 - -1.3
371,540 + +0.7
371,568 + +1.9
371,571 - -0.9
371,571 - +1.0
371,597 - -1.0
371,614 + +0.5
371,622 - +0.7
371,729 + +0.5
371,739 + +0.5
371,822 + Dshi_0390 0.11 +0.6
371,835 - Dshi_0390 0.12 +1.8
371,875 - Dshi_0390 0.16 +0.1
371,896 + Dshi_0390 0.18 +0.5
371,940 + Dshi_0390 0.22 +0.3
371,948 - Dshi_0390 0.23 +0.2
371,976 - Dshi_0390 0.26 +0.5
372,038 + Dshi_0390 0.32 -0.5
372,046 + Dshi_0390 0.33 +0.3
372,118 - Dshi_0390 0.40 -1.2
372,137 - Dshi_0390 0.42 +0.9
372,179 - Dshi_0390 0.46 -0.2
372,395 - Dshi_0390 0.67 +1.3
372,583 + Dshi_0390 0.86 -2.7
372,591 + Dshi_0390 0.86 +0.0
372,591 - Dshi_0390 0.86 -0.9
372,642 - -0.2
372,696 + -0.1
372,696 + +0.0
372,696 + -0.2
372,696 + -0.8
372,711 - +0.1
372,753 + -1.1
372,785 + -0.4
372,892 + +0.2
372,893 - +0.2
372,914 - +0.2
372,931 + +0.6
372,976 + +0.1

Or see this region's nucleotide sequence