Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0319

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0318 and Dshi_0319 are separated by 120 nucleotidesDshi_0319 and Dshi_0320 are separated by 1 nucleotides Dshi_0318: Dshi_0318 - cationic amino acid ABC transporter, periplasmic binding protein (RefSeq), at 306,292 to 307,308 _0318 Dshi_0319: Dshi_0319 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 307,429 to 308,664 _0319 Dshi_0320: Dshi_0320 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 308,666 to 309,964 _0320 Position (kb) 307 308 309Strain fitness (log2 ratio) -1 0 1 2 3at 306.458 kb on + strand, within Dshi_0318at 306.466 kb on - strand, within Dshi_0318at 306.469 kb on + strand, within Dshi_0318at 306.474 kb on + strand, within Dshi_0318at 306.474 kb on + strand, within Dshi_0318at 306.507 kb on + strand, within Dshi_0318at 306.507 kb on + strand, within Dshi_0318at 306.521 kb on + strand, within Dshi_0318at 306.538 kb on + strand, within Dshi_0318at 306.541 kb on - strand, within Dshi_0318at 306.546 kb on - strand, within Dshi_0318at 306.556 kb on + strand, within Dshi_0318at 306.661 kb on + strand, within Dshi_0318at 306.661 kb on + strand, within Dshi_0318at 306.668 kb on + strand, within Dshi_0318at 306.669 kb on - strand, within Dshi_0318at 306.669 kb on - strand, within Dshi_0318at 306.727 kb on - strand, within Dshi_0318at 306.914 kb on + strand, within Dshi_0318at 306.930 kb on + strand, within Dshi_0318at 306.973 kb on - strand, within Dshi_0318at 307.042 kb on + strand, within Dshi_0318at 307.113 kb on + strand, within Dshi_0318at 307.277 kb on - strandat 307.277 kb on - strandat 307.279 kb on + strandat 307.284 kb on + strandat 307.284 kb on + strandat 307.287 kb on - strandat 307.287 kb on - strandat 307.292 kb on - strandat 307.372 kb on + strandat 307.377 kb on + strandat 307.380 kb on - strandat 307.380 kb on - strandat 307.382 kb on + strandat 307.421 kb on + strandat 307.426 kb on + strandat 307.528 kb on + strandat 307.573 kb on + strand, within Dshi_0319at 307.588 kb on + strand, within Dshi_0319at 307.588 kb on + strand, within Dshi_0319at 307.598 kb on - strand, within Dshi_0319at 307.604 kb on + strand, within Dshi_0319at 307.641 kb on + strand, within Dshi_0319at 307.674 kb on + strand, within Dshi_0319at 307.740 kb on - strand, within Dshi_0319at 307.782 kb on + strand, within Dshi_0319at 307.887 kb on - strand, within Dshi_0319at 307.946 kb on - strand, within Dshi_0319at 307.965 kb on - strand, within Dshi_0319at 307.968 kb on - strand, within Dshi_0319at 307.983 kb on - strand, within Dshi_0319at 307.993 kb on + strand, within Dshi_0319at 307.995 kb on + strand, within Dshi_0319at 308.111 kb on + strand, within Dshi_0319at 308.210 kb on + strand, within Dshi_0319at 308.210 kb on + strand, within Dshi_0319at 308.210 kb on + strand, within Dshi_0319at 308.218 kb on - strand, within Dshi_0319at 308.218 kb on - strand, within Dshi_0319at 308.233 kb on - strand, within Dshi_0319at 308.269 kb on + strand, within Dshi_0319at 308.351 kb on - strand, within Dshi_0319at 308.357 kb on - strand, within Dshi_0319at 308.363 kb on - strand, within Dshi_0319at 308.459 kb on + strand, within Dshi_0319at 308.524 kb on - strand, within Dshi_0319at 308.549 kb on - strandat 308.559 kb on - strandat 308.594 kb on - strandat 308.622 kb on + strandat 308.703 kb on - strandat 308.778 kb on + strandat 308.786 kb on - strandat 308.798 kb on - strand, within Dshi_0320at 308.816 kb on + strand, within Dshi_0320at 309.010 kb on - strand, within Dshi_0320at 309.010 kb on - strand, within Dshi_0320at 309.010 kb on - strand, within Dshi_0320at 309.010 kb on - strand, within Dshi_0320at 309.010 kb on - strand, within Dshi_0320at 309.112 kb on + strand, within Dshi_0320at 309.141 kb on - strand, within Dshi_0320at 309.418 kb on + strand, within Dshi_0320at 309.487 kb on - strand, within Dshi_0320at 309.542 kb on + strand, within Dshi_0320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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306,458 + Dshi_0318 0.16 +2.4
306,466 - Dshi_0318 0.17 +3.7
306,469 + Dshi_0318 0.17 +0.9
306,474 + Dshi_0318 0.18 +1.8
306,474 + Dshi_0318 0.18 +1.1
306,507 + Dshi_0318 0.21 +1.8
306,507 + Dshi_0318 0.21 +1.3
306,521 + Dshi_0318 0.23 +0.9
306,538 + Dshi_0318 0.24 +0.1
306,541 - Dshi_0318 0.24 -0.4
306,546 - Dshi_0318 0.25 +1.8
306,556 + Dshi_0318 0.26 +2.7
306,661 + Dshi_0318 0.36 +0.0
306,661 + Dshi_0318 0.36 +1.4
306,668 + Dshi_0318 0.37 +2.3
306,669 - Dshi_0318 0.37 +1.7
306,669 - Dshi_0318 0.37 +1.1
306,727 - Dshi_0318 0.43 +1.6
306,914 + Dshi_0318 0.61 +1.7
306,930 + Dshi_0318 0.63 +1.4
306,973 - Dshi_0318 0.67 +1.8
307,042 + Dshi_0318 0.74 +2.4
307,113 + Dshi_0318 0.81 -0.3
307,277 - +1.3
307,277 - +1.4
307,279 + +2.0
307,284 + +1.5
307,284 + -0.2
307,287 - +0.8
307,287 - +1.8
307,292 - +1.7
307,372 + +1.3
307,377 + +0.8
307,380 - +0.4
307,380 - +0.6
307,382 + +0.1
307,421 + +0.3
307,426 + +0.6
307,528 + +1.1
307,573 + Dshi_0319 0.12 +1.0
307,588 + Dshi_0319 0.13 +1.1
307,588 + Dshi_0319 0.13 +0.5
307,598 - Dshi_0319 0.14 +0.8
307,604 + Dshi_0319 0.14 -0.7
307,641 + Dshi_0319 0.17 -0.1
307,674 + Dshi_0319 0.20 +0.5
307,740 - Dshi_0319 0.25 +0.6
307,782 + Dshi_0319 0.29 +0.4
307,887 - Dshi_0319 0.37 +1.2
307,946 - Dshi_0319 0.42 -0.6
307,965 - Dshi_0319 0.43 +0.6
307,968 - Dshi_0319 0.44 +0.8
307,983 - Dshi_0319 0.45 +1.2
307,993 + Dshi_0319 0.46 +0.4
307,995 + Dshi_0319 0.46 -0.1
308,111 + Dshi_0319 0.55 -0.6
308,210 + Dshi_0319 0.63 -0.9
308,210 + Dshi_0319 0.63 +0.9
308,210 + Dshi_0319 0.63 +0.0
308,218 - Dshi_0319 0.64 +1.0
308,218 - Dshi_0319 0.64 +0.6
308,233 - Dshi_0319 0.65 +0.4
308,269 + Dshi_0319 0.68 +0.2
308,351 - Dshi_0319 0.75 -0.2
308,357 - Dshi_0319 0.75 +0.7
308,363 - Dshi_0319 0.76 +0.1
308,459 + Dshi_0319 0.83 -1.0
308,524 - Dshi_0319 0.89 +1.9
308,549 - -1.6
308,559 - +0.8
308,594 - -0.6
308,622 + +0.2
308,703 - -0.3
308,778 + +0.4
308,786 - +0.1
308,798 - Dshi_0320 0.10 -0.4
308,816 + Dshi_0320 0.12 -1.3
309,010 - Dshi_0320 0.26 +1.2
309,010 - Dshi_0320 0.26 -0.4
309,010 - Dshi_0320 0.26 -0.2
309,010 - Dshi_0320 0.26 -0.1
309,010 - Dshi_0320 0.26 -0.3
309,112 + Dshi_0320 0.34 +0.7
309,141 - Dshi_0320 0.37 +0.5
309,418 + Dshi_0320 0.58 +0.3
309,487 - Dshi_0320 0.63 +0.4
309,542 + Dshi_0320 0.67 -0.1

Or see this region's nucleotide sequence