Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0108

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0107 and Dshi_0108 are separated by 7 nucleotidesDshi_0108 and Dshi_0109 are separated by 190 nucleotides Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960 _0107 Dshi_0108: Dshi_0108 - hypothetical protein (RefSeq), at 106,968 to 107,909 _0108 Dshi_0109: Dshi_0109 - Auxin Efflux Carrier (RefSeq), at 108,100 to 109,035 _0109 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1at 106.083 kb on - strandat 106.220 kb on + strand, within Dshi_0107at 106.374 kb on + strand, within Dshi_0107at 106.401 kb on + strand, within Dshi_0107at 106.475 kb on - strand, within Dshi_0107at 106.498 kb on + strand, within Dshi_0107at 106.508 kb on + strand, within Dshi_0107at 106.523 kb on - strand, within Dshi_0107at 106.533 kb on - strand, within Dshi_0107at 106.564 kb on - strand, within Dshi_0107at 106.656 kb on + strand, within Dshi_0107at 106.666 kb on + strand, within Dshi_0107at 106.758 kb on + strand, within Dshi_0107at 106.758 kb on + strand, within Dshi_0107at 106.763 kb on + strand, within Dshi_0107at 106.774 kb on + strand, within Dshi_0107at 106.774 kb on + strand, within Dshi_0107at 106.774 kb on + strand, within Dshi_0107at 106.782 kb on - strand, within Dshi_0107at 106.895 kb on + strandat 106.895 kb on + strandat 106.903 kb on - strandat 106.914 kb on + strandat 106.919 kb on + strandat 107.099 kb on + strand, within Dshi_0108at 107.107 kb on - strand, within Dshi_0108at 107.152 kb on - strand, within Dshi_0108at 107.152 kb on - strand, within Dshi_0108at 107.221 kb on - strand, within Dshi_0108at 107.255 kb on - strand, within Dshi_0108at 107.303 kb on + strand, within Dshi_0108at 107.322 kb on - strand, within Dshi_0108at 107.337 kb on + strand, within Dshi_0108at 107.404 kb on + strand, within Dshi_0108at 107.432 kb on - strand, within Dshi_0108at 107.435 kb on + strand, within Dshi_0108at 107.468 kb on + strand, within Dshi_0108at 107.483 kb on - strand, within Dshi_0108at 107.484 kb on + strand, within Dshi_0108at 107.492 kb on - strand, within Dshi_0108at 107.618 kb on + strand, within Dshi_0108at 107.618 kb on + strand, within Dshi_0108at 107.709 kb on - strand, within Dshi_0108at 107.709 kb on - strand, within Dshi_0108at 107.739 kb on - strand, within Dshi_0108at 107.810 kb on + strand, within Dshi_0108at 107.872 kb on - strandat 107.874 kb on + strandat 107.891 kb on - strandat 107.932 kb on - strandat 107.934 kb on + strandat 107.989 kb on + strandat 107.992 kb on - strandat 108.003 kb on + strandat 108.003 kb on + strandat 108.092 kb on - strandat 108.095 kb on + strandat 108.150 kb on + strandat 108.295 kb on + strand, within Dshi_0109at 108.391 kb on - strand, within Dshi_0109at 108.411 kb on - strand, within Dshi_0109at 108.472 kb on - strand, within Dshi_0109at 108.491 kb on + strand, within Dshi_0109at 108.491 kb on + strand, within Dshi_0109at 108.529 kb on - strand, within Dshi_0109at 108.555 kb on + strand, within Dshi_0109at 108.592 kb on - strand, within Dshi_0109at 108.603 kb on + strand, within Dshi_0109at 108.628 kb on + strand, within Dshi_0109at 108.636 kb on - strand, within Dshi_0109at 108.636 kb on - strand, within Dshi_0109at 108.739 kb on - strand, within Dshi_0109at 108.777 kb on - strand, within Dshi_0109at 108.840 kb on - strand, within Dshi_0109

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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106,083 - -0.6
106,220 + Dshi_0107 0.24 -1.8
106,374 + Dshi_0107 0.40 +1.4
106,401 + Dshi_0107 0.42 -0.7
106,475 - Dshi_0107 0.50 -1.1
106,498 + Dshi_0107 0.52 -0.2
106,508 + Dshi_0107 0.53 +0.0
106,523 - Dshi_0107 0.55 -1.9
106,533 - Dshi_0107 0.56 -1.6
106,564 - Dshi_0107 0.59 -1.1
106,656 + Dshi_0107 0.69 +0.2
106,666 + Dshi_0107 0.70 +0.3
106,758 + Dshi_0107 0.79 -1.3
106,758 + Dshi_0107 0.79 -1.7
106,763 + Dshi_0107 0.80 -1.8
106,774 + Dshi_0107 0.81 +0.6
106,774 + Dshi_0107 0.81 -0.6
106,774 + Dshi_0107 0.81 -0.2
106,782 - Dshi_0107 0.82 -0.3
106,895 + -0.2
106,895 + -0.2
106,903 - -0.3
106,914 + -1.4
106,919 + -0.2
107,099 + Dshi_0108 0.14 +0.5
107,107 - Dshi_0108 0.15 -0.6
107,152 - Dshi_0108 0.20 -0.2
107,152 - Dshi_0108 0.20 -0.3
107,221 - Dshi_0108 0.27 -1.5
107,255 - Dshi_0108 0.30 -0.7
107,303 + Dshi_0108 0.36 -1.0
107,322 - Dshi_0108 0.38 +0.3
107,337 + Dshi_0108 0.39 -0.5
107,404 + Dshi_0108 0.46 +1.0
107,432 - Dshi_0108 0.49 -0.7
107,435 + Dshi_0108 0.50 -0.3
107,468 + Dshi_0108 0.53 -1.3
107,483 - Dshi_0108 0.55 -1.6
107,484 + Dshi_0108 0.55 -0.6
107,492 - Dshi_0108 0.56 -1.2
107,618 + Dshi_0108 0.69 -1.3
107,618 + Dshi_0108 0.69 -0.6
107,709 - Dshi_0108 0.79 +0.1
107,709 - Dshi_0108 0.79 -1.3
107,739 - Dshi_0108 0.82 -2.4
107,810 + Dshi_0108 0.89 -0.8
107,872 - -0.4
107,874 + +0.5
107,891 - +0.2
107,932 - -0.2
107,934 + +0.3
107,989 + -0.2
107,992 - -0.5
108,003 + +0.0
108,003 + -0.7
108,092 - +0.4
108,095 + -1.0
108,150 + -1.4
108,295 + Dshi_0109 0.21 +0.5
108,391 - Dshi_0109 0.31 +0.5
108,411 - Dshi_0109 0.33 -1.3
108,472 - Dshi_0109 0.40 +0.6
108,491 + Dshi_0109 0.42 +0.5
108,491 + Dshi_0109 0.42 -0.2
108,529 - Dshi_0109 0.46 +0.2
108,555 + Dshi_0109 0.49 -0.2
108,592 - Dshi_0109 0.53 +0.0
108,603 + Dshi_0109 0.54 +0.2
108,628 + Dshi_0109 0.56 +0.8
108,636 - Dshi_0109 0.57 -0.1
108,636 - Dshi_0109 0.57 -1.0
108,739 - Dshi_0109 0.68 +0.2
108,777 - Dshi_0109 0.72 +0.5
108,840 - Dshi_0109 0.79 +0.4

Or see this region's nucleotide sequence