Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14095

Experiment: a-Cyclodextrin 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 20 mM
3,143,280	+		LRK54_RS14085	0.85	-0.6
3,143,280	+		LRK54_RS14085	0.85	+2.3
3,143,280	+		LRK54_RS14085	0.85	+0.5
3,143,280	+		LRK54_RS14085	0.85	-2.2
3,143,280	+		LRK54_RS14085	0.85	-2.5
3,143,280	+		LRK54_RS14085	0.85	-2.0
3,143,280	+		LRK54_RS14085	0.85	+0.2
3,143,280	+		LRK54_RS14085	0.85	-0.7
3,143,280	+		LRK54_RS14085	0.85	-0.8
3,143,280	+		LRK54_RS14085	0.85	-0.4
3,143,280	+		LRK54_RS14085	0.85	-1.6
3,143,280	+		LRK54_RS14085	0.85	-1.0
3,143,280	+		LRK54_RS14085	0.85	+1.5
3,143,280	+		LRK54_RS14085	0.85	-1.2
3,143,280	+		LRK54_RS14085	0.85	-2.0
3,143,280	+		LRK54_RS14085	0.85	-2.0
3,143,280	+		LRK54_RS14085	0.85	-0.2
3,143,280	+		LRK54_RS14085	0.85	+0.4
3,143,281	-		LRK54_RS14085	0.85	-0.5
3,143,281	-		LRK54_RS14085	0.85	-2.2
3,143,281	-		LRK54_RS14085	0.85	-1.6
3,143,281	-		LRK54_RS14085	0.85	-0.3
3,143,281	-		LRK54_RS14085	0.85	-0.5
3,143,281	-		LRK54_RS14085	0.85	-0.3
3,143,281	-		LRK54_RS14085	0.85	+0.9
3,143,281	-		LRK54_RS14085	0.85	+0.5
3,143,281	-		LRK54_RS14085	0.85	-1.5
3,143,281	-		LRK54_RS14085	0.85	+0.1
3,143,771	+		LRK54_RS14090	0.56	-0.5
3,143,771	+		LRK54_RS14090	0.56	-0.0
3,143,771	+		LRK54_RS14090	0.56	-0.1
3,143,772	-		LRK54_RS14090	0.56	-3.2
3,143,772	-		LRK54_RS14090	0.56	+0.5
3,143,772	-		LRK54_RS14090	0.56	-1.4
3,143,911	+		LRK54_RS14090	0.81	+4.9
3,143,911	+		LRK54_RS14090	0.81	-0.0
3,143,912	-		LRK54_RS14090	0.81	+1.0
3,143,912	-		LRK54_RS14090	0.81	+4.6
3,143,912	-		LRK54_RS14090	0.81	-1.6
3,144,012	+				+1.1
3,144,013	-				-0.9
3,144,109	+				-0.3
3,144,109	+				+2.5
3,144,110	-				-1.2
3,144,110	-				+2.2
3,144,110	-				+0.1
3,144,110	-				-0.8
3,144,339	+				+0.1
3,144,339	+				+1.0
3,144,339	+				-1.2
3,144,339	+				+0.1
3,144,339	+				-1.5
3,144,339	+				+0.1
3,144,340	-				-0.5
3,144,340	-				-3.4
3,144,340	-				-1.5
3,144,341	+				-0.9
3,144,341	+				-0.5
3,144,341	+				-0.2
3,144,341	+				-0.0
3,144,341	+				-0.3
3,144,341	+				-0.3
3,144,341	+				-0.3
3,144,341	+				+0.5
3,144,341	+				-0.9
3,144,341	+				-1.6
3,144,341	+				+0.4
3,144,341	+				-0.0
3,144,341	+				-0.9
3,144,341	+				-0.2
3,144,341	+				+1.0
3,144,341	+				+1.2
3,144,341	+				+0.4
3,144,342	-				-1.0
3,144,342	-				-1.6
3,144,342	-				-0.3
3,144,342	-				+0.3
3,144,342	-				+0.2
3,144,342	-				+0.1
3,144,342	-				-0.0
3,144,342	-				-0.4
3,144,342	-				+1.0
3,144,342	-				-0.5
3,144,342	-				-0.5
3,144,342	-				-1.2
3,144,342	-				+0.0
3,144,342	-				-0.6
3,144,342	-				+0.2
3,144,342	-				-1.5
3,144,342	-				+1.5
3,144,430	+		LRK54_RS14095	0.21	-1.8
3,144,430	+		LRK54_RS14095	0.21	-1.7
3,144,430	+		LRK54_RS14095	0.21	-1.2
3,144,430	+		LRK54_RS14095	0.21	+0.5
3,144,430	+		LRK54_RS14095	0.21	+1.4
3,144,430	+		LRK54_RS14095	0.21	-0.0
3,144,430	+		LRK54_RS14095	0.21	-0.8
3,144,430	+		LRK54_RS14095	0.21	+0.2
3,144,431	-		LRK54_RS14095	0.22	-1.0
3,144,431	-		LRK54_RS14095	0.22	-0.4
3,144,431	-		LRK54_RS14095	0.22	+0.2
3,144,431	-		LRK54_RS14095	0.22	+0.7
3,144,431	-		LRK54_RS14095	0.22	-1.3
3,144,431	-		LRK54_RS14095	0.22	-0.0
3,144,431	-		LRK54_RS14095	0.22	+0.4
3,144,431	-		LRK54_RS14095	0.22	-0.4
3,144,431	-		LRK54_RS14095	0.22	-2.1
3,144,661	+		LRK54_RS14095	0.52	+1.0
3,144,661	+		LRK54_RS14095	0.52	-0.1
3,144,661	+		LRK54_RS14095	0.52	-0.3
3,144,661	+		LRK54_RS14095	0.52	+0.6
3,144,661	+		LRK54_RS14095	0.52	-0.8
3,144,661	+		LRK54_RS14095	0.52	-2.2
3,144,661	+		LRK54_RS14095	0.52	+0.2
3,144,661	+		LRK54_RS14095	0.52	-0.9
3,144,662	-		LRK54_RS14095	0.52	-0.3
3,144,662	-		LRK54_RS14095	0.52	-1.5
3,144,662	-		LRK54_RS14095	0.52	-0.8
3,144,662	-		LRK54_RS14095	0.52	+2.1
3,144,662	-		LRK54_RS14095	0.52	+0.4
3,144,832	+		LRK54_RS14095	0.74	+0.7
3,144,832	+		LRK54_RS14095	0.74	+0.1
3,144,832	+		LRK54_RS14095	0.74	-0.0
3,144,832	+		LRK54_RS14095	0.74	+1.5
3,144,832	+		LRK54_RS14095	0.74	+0.4
3,144,832	+		LRK54_RS14095	0.74	-0.2
3,144,832	+		LRK54_RS14095	0.74	-0.1
3,144,832	+		LRK54_RS14095	0.74	+0.5
3,144,832	+		LRK54_RS14095	0.74	+0.2
3,144,832	+		LRK54_RS14095	0.74	-1.9
3,144,833	-		LRK54_RS14095	0.74	-1.1
3,144,833	-		LRK54_RS14095	0.74	+0.4
3,144,833	-		LRK54_RS14095	0.74	+3.3
3,144,833	-		LRK54_RS14095	0.74	+3.1
3,144,833	-		LRK54_RS14095	0.74	+0.3
3,144,833	-		LRK54_RS14095	0.74	-1.5
3,144,833	-		LRK54_RS14095	0.74	-0.0
3,144,833	-		LRK54_RS14095	0.74	+0.3
3,144,833	-		LRK54_RS14095	0.74	+2.3
3,144,862	+		LRK54_RS14095	0.78	-2.0
3,144,863	-		LRK54_RS14095	0.78	+1.3
3,145,042	+				-0.7
3,145,042	+				-0.6
3,145,042	+				-1.4
3,145,042	+				-0.0
3,145,042	+				-2.5
3,145,042	+				-0.0
3,145,042	+				-0.0
3,145,043	-				+1.2
3,145,043	-				-1.0
3,145,097	+				-2.2
3,145,097	+				-0.0
3,145,097	+				-3.5
3,145,097	+				-0.6
3,145,097	+				-0.7
3,145,097	+				-0.6
3,145,097	+				-3.1
3,145,097	+				-2.1
3,145,097	+				-3.6
3,145,097	+				-2.4
3,145,098	-				-0.8
3,145,098	-				+1.0
3,145,098	-				-0.8
3,145,098	-				+1.5
3,145,098	-				-0.3
3,145,098	-				-1.3
3,145,098	-				-1.9
3,145,098	-				-0.7
3,145,098	-				-1.2
3,145,098	-				-2.8
3,145,098	-				-0.0
3,145,098	-				-1.0
3,145,098	-				+6.3
3,145,098	-				+0.2
3,145,098	-				-0.4
3,145,098	-				-1.2
3,145,108	+				+0.8
3,145,108	+				+1.3
3,145,125	+				-1.4
3,145,125	+				+1.0
3,145,125	+				-0.6
3,145,125	+				-1.6
3,145,125	+				+0.3
3,145,125	+				-0.2
3,145,125	+				+0.1
3,145,125	+				-0.3
3,145,126	-				+0.4
3,145,126	-				-2.6
3,145,126	-				+0.3
3,145,126	-				-0.0
3,145,126	-				-2.0
3,145,126	-				+0.2
3,145,126	-				-0.2
3,145,126	-				+1.0
3,145,126	-				+1.1
3,145,164	+				-0.9
3,145,165	-				+1.1
3,145,165	-				-0.5
3,145,299	+		LRK54_RS14100	0.15	+1.2
3,145,299	+		LRK54_RS14100	0.15	+0.7
3,145,299	+		LRK54_RS14100	0.15	-0.5
3,145,299	+		LRK54_RS14100	0.15	-0.0
3,145,299	+		LRK54_RS14100	0.15	+0.2
3,145,299	+		LRK54_RS14100	0.15	-0.3
3,145,299	+		LRK54_RS14100	0.15	+1.0
3,145,299	+		LRK54_RS14100	0.15	-1.4
3,145,299	+		LRK54_RS14100	0.15	+3.0
3,145,299	+		LRK54_RS14100	0.15	-0.7
3,145,299	+		LRK54_RS14100	0.15	+1.8
3,145,299	+		LRK54_RS14100	0.15	+1.3
3,145,299	+		LRK54_RS14100	0.15	-0.7
3,145,299	+		LRK54_RS14100	0.15	-1.2
3,145,299	+		LRK54_RS14100	0.15	+2.0
3,145,299	+		LRK54_RS14100	0.15	-0.9
3,145,300	-		LRK54_RS14100	0.15	+2.0
3,145,300	-		LRK54_RS14100	0.15	+1.0
3,145,300	-		LRK54_RS14100	0.15	+0.0
3,145,300	-		LRK54_RS14100	0.15	+0.8
3,145,300	-		LRK54_RS14100	0.15	+0.4
3,145,300	-		LRK54_RS14100	0.15	+0.7
3,145,300	-		LRK54_RS14100	0.15	-1.2
3,145,300	-		LRK54_RS14100	0.15	-0.5
3,145,300	-		LRK54_RS14100	0.15	-0.4
3,145,300	-		LRK54_RS14100	0.15	-0.0
3,145,300	-		LRK54_RS14100	0.15	+5.2
3,145,300	-		LRK54_RS14100	0.15	+1.9
3,145,300	-		LRK54_RS14100	0.15	-2.6
3,145,300	-		LRK54_RS14100	0.15	+0.7
3,145,300	-		LRK54_RS14100	0.15	+1.2
3,145,300	-		LRK54_RS14100	0.15	-1.2
3,145,300	-		LRK54_RS14100	0.15	-0.3
3,145,326	+		LRK54_RS14100	0.20	+2.1
3,145,326	+		LRK54_RS14100	0.20	-0.9
3,145,326	+		LRK54_RS14100	0.20	+0.4
3,145,326	+		LRK54_RS14100	0.20	+0.6
3,145,327	-		LRK54_RS14100	0.20	+0.4
3,145,327	-		LRK54_RS14100	0.20	+0.9
3,145,327	-		LRK54_RS14100	0.20	+1.2
3,145,509	+		LRK54_RS14100	0.52	+0.2
3,145,509	+		LRK54_RS14100	0.52	+0.5
3,145,509	+		LRK54_RS14100	0.52	-0.3
3,145,509	+		LRK54_RS14100	0.52	+1.0
3,145,509	+		LRK54_RS14100	0.52	+1.7
3,145,509	+		LRK54_RS14100	0.52	+0.0
3,145,509	+		LRK54_RS14100	0.52	+0.7
3,145,510	-		LRK54_RS14100	0.52	-0.6
3,145,510	-		LRK54_RS14100	0.52	+1.6
3,145,510	-		LRK54_RS14100	0.52	+1.4
3,145,510	-		LRK54_RS14100	0.52	+0.0
3,145,510	-		LRK54_RS14100	0.52	-0.4
3,145,510	-		LRK54_RS14100	0.52	-0.4
3,145,671	+		LRK54_RS14100	0.81	+1.2
3,145,671	+		LRK54_RS14100	0.81	+1.4
3,145,671	+		LRK54_RS14100	0.81	-0.6
3,145,672	-		LRK54_RS14100	0.81	+0.6
3,145,672	-		LRK54_RS14100	0.81	+1.1
3,145,672	-		LRK54_RS14100	0.81	+1.3
3,145,672	-		LRK54_RS14100	0.81	-0.6
3,145,672	-		LRK54_RS14100	0.81	+0.1
3,145,672	-		LRK54_RS14100	0.81	+0.5
3,145,674	+		LRK54_RS14100	0.81	+1.0
3,145,674	+		LRK54_RS14100	0.81	+1.2
3,145,674	+		LRK54_RS14100	0.81	+0.7
3,145,674	+		LRK54_RS14100	0.81	+0.3
3,145,674	+		LRK54_RS14100	0.81	-0.3
3,145,674	+		LRK54_RS14100	0.81	+2.4
3,145,674	+		LRK54_RS14100	0.81	-0.5
3,145,674	+		LRK54_RS14100	0.81	+1.5
3,145,674	+		LRK54_RS14100	0.81	+0.8
3,145,674	+		LRK54_RS14100	0.81	-0.0
3,145,675	-		LRK54_RS14100	0.82	+0.2
3,145,675	-		LRK54_RS14100	0.82	-0.0
3,145,675	-		LRK54_RS14100	0.82	+2.5
3,145,675	-		LRK54_RS14100	0.82	+4.5
3,145,675	-		LRK54_RS14100	0.82	-1.5
3,145,675	-		LRK54_RS14100	0.82	+0.8
3,145,675	-		LRK54_RS14100	0.82	-0.2
3,145,675	-		LRK54_RS14100	0.82	+0.6
3,145,675	-		LRK54_RS14100	0.82	+1.0
3,145,675	-		LRK54_RS14100	0.82	+1.2
3,145,675	-		LRK54_RS14100	0.82	+1.5
3,145,716	+		LRK54_RS14100	0.89	-1.3
3,145,716	+		LRK54_RS14100	0.89	+1.0
3,145,716	+		LRK54_RS14100	0.89	-0.8
3,145,716	+		LRK54_RS14100	0.89	+0.9
3,145,716	+		LRK54_RS14100	0.89	-1.6
3,145,716	+		LRK54_RS14100	0.89	+1.0
3,145,716	+		LRK54_RS14100	0.89	-0.5
3,145,716	+		LRK54_RS14100	0.89	+1.8
3,145,716	+		LRK54_RS14100	0.89	-0.0
3,145,716	+		LRK54_RS14100	0.89	+0.5
3,145,716	+		LRK54_RS14100	0.89	+1.0
3,145,716	+		LRK54_RS14100	0.89	+0.7
3,145,716	+		LRK54_RS14100	0.89	+1.0
3,145,716	+		LRK54_RS14100	0.89	-0.3
3,145,716	+		LRK54_RS14100	0.89	-0.8
3,145,717	-		LRK54_RS14100	0.89	+2.1
3,145,717	-		LRK54_RS14100	0.89	-0.3
3,145,717	-		LRK54_RS14100	0.89	-0.9
3,145,717	-		LRK54_RS14100	0.89	+2.5
3,145,717	-		LRK54_RS14100	0.89	+0.9
3,145,717	-		LRK54_RS14100	0.89	+2.8
3,145,717	-		LRK54_RS14100	0.89	-0.5
3,145,717	-		LRK54_RS14100	0.89	+1.7
3,145,717	-		LRK54_RS14100	0.89	-0.3
3,145,717	-		LRK54_RS14100	0.89	+0.4
3,145,717	-		LRK54_RS14100	0.89	+1.8
3,145,717	-		LRK54_RS14100	0.89	+1.3
3,145,717	-		LRK54_RS14100	0.89	+1.0
3,145,717	-		LRK54_RS14100	0.89	+0.1
3,145,717	-		LRK54_RS14100	0.89	-0.7
3,145,717	-		LRK54_RS14100	0.89	+0.4
3,145,717	-		LRK54_RS14100	0.89	-0.9
3,145,717	-		LRK54_RS14100	0.89	-1.5