Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12920

Experiment: a-Cyclodextrin 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 20 mM
2,886,703	+				-0.1
2,886,704	-				+0.2
2,886,725	+				-0.5
2,886,725	+				+0.2
2,886,725	+				-2.2
2,886,725	+				+1.2
2,886,725	+				+2.0
2,886,726	-				-0.7
2,886,726	-				+0.6
2,886,726	-				+0.2
2,886,726	-				-0.2
2,886,921	+		LRK54_RS12915	0.29	-0.9
2,886,921	+		LRK54_RS12915	0.29	+1.0
2,886,921	+		LRK54_RS12915	0.29	-1.8
2,886,921	+		LRK54_RS12915	0.29	+1.5
2,886,922	-		LRK54_RS12915	0.29	+0.2
2,886,922	-		LRK54_RS12915	0.29	+1.8
2,886,922	-		LRK54_RS12915	0.29	+1.5
2,886,922	-		LRK54_RS12915	0.29	-1.1
2,886,922	-		LRK54_RS12915	0.29	+0.2
2,887,202	+		LRK54_RS12915	0.70	+1.1
2,887,202	+		LRK54_RS12915	0.70	+0.7
2,887,202	+		LRK54_RS12915	0.70	+0.9
2,887,202	+		LRK54_RS12915	0.70	-0.1
2,887,202	+		LRK54_RS12915	0.70	-0.0
2,887,202	+		LRK54_RS12915	0.70	-0.8
2,887,202	+		LRK54_RS12915	0.70	+0.8
2,887,202	+		LRK54_RS12915	0.70	+0.3
2,887,202	+		LRK54_RS12915	0.70	-1.0
2,887,202	+		LRK54_RS12915	0.70	+1.0
2,887,203	-		LRK54_RS12915	0.70	+0.5
2,887,203	-		LRK54_RS12915	0.70	-2.2
2,887,203	-		LRK54_RS12915	0.70	+0.6
2,887,203	-		LRK54_RS12915	0.70	+1.0
2,887,203	-		LRK54_RS12915	0.70	-0.9
2,887,203	-		LRK54_RS12915	0.70	-0.6
2,887,373	+				-0.5
2,887,373	+				-0.0
2,887,374	-				-0.8
2,887,374	-				-1.5
2,887,374	-				-1.2
2,887,413	+				+2.3
2,887,413	+				-0.3
2,887,440	+				-0.4
2,887,440	+				-0.5
2,887,440	+				+1.1
2,887,440	+				-1.3
2,887,441	-				-2.4
2,887,441	-				+1.2
2,887,441	-				-1.7
2,887,441	-				+0.4
2,887,441	-				-0.5
2,887,441	-				+1.0
2,887,441	-				-0.3
2,887,441	-				+0.5
2,887,466	+				+0.2
2,887,466	+				+0.4
2,887,466	+				-2.5
2,887,466	+				-0.3
2,887,466	+				-1.0
2,887,467	-				-1.1
2,887,467	-				+0.2
2,887,467	-				+1.4
2,887,467	-				-0.7
2,887,467	-				+0.9
2,887,467	-				+0.2
2,887,467	-				-1.3
2,888,255	+		LRK54_RS12920	0.67	+1.3
2,888,312	+		LRK54_RS12920	0.71	+0.5
2,888,312	+		LRK54_RS12920	0.71	-0.0
2,888,312	+		LRK54_RS12920	0.71	-2.9
2,888,312	+		LRK54_RS12920	0.71	+0.4
2,888,312	+		LRK54_RS12920	0.71	+3.3
2,888,312	+		LRK54_RS12920	0.71	-0.9
2,888,312	+		LRK54_RS12920	0.71	-1.6
2,888,312	+		LRK54_RS12920	0.71	+1.7
2,888,312	+		LRK54_RS12920	0.71	-0.5
2,888,313	-		LRK54_RS12920	0.72	-0.6
2,888,313	-		LRK54_RS12920	0.72	-0.2
2,888,313	-		LRK54_RS12920	0.72	-0.2
2,888,313	-		LRK54_RS12920	0.72	-0.6
2,888,313	-		LRK54_RS12920	0.72	-0.8
2,888,313	-		LRK54_RS12920	0.72	+1.3
2,888,313	-		LRK54_RS12920	0.72	-0.9
2,888,313	-		LRK54_RS12920	0.72	+0.5
2,888,313	-		LRK54_RS12920	0.72	+0.1
2,888,322	+		LRK54_RS12920	0.72	-1.0
2,888,322	+		LRK54_RS12920	0.72	+1.3
2,888,323	-		LRK54_RS12920	0.72	+1.0
2,888,721	+				+0.2
2,888,721	+				-1.5
2,888,721	+				-0.0
2,888,721	+				+2.5
2,888,721	+				+0.2
2,888,721	+				+1.5
2,888,721	+				+0.5
2,888,721	+				+1.7
2,888,721	+				+1.0
2,888,721	+				+0.1
2,888,722	-				+1.1
2,888,722	-				+0.7
2,888,722	-				+3.0
2,888,722	-				+0.1
2,888,722	-				+0.8
2,888,722	-				-2.2
2,888,722	-				+2.0
2,888,722	-				-0.2
2,888,722	-				+0.2
2,888,726	+				+4.6
2,888,726	+				+0.1
2,888,726	+				-1.3
2,888,726	+				+0.5
2,888,727	-				+2.1
2,888,727	-				-0.5
2,889,029	+		LRK54_RS12925	0.29	-1.6
2,889,029	+		LRK54_RS12925	0.29	-0.6
2,889,101	+		LRK54_RS12925	0.37	+1.0
2,889,101	+		LRK54_RS12925	0.37	+0.5
2,889,101	+		LRK54_RS12925	0.37	-0.9
2,889,101	+		LRK54_RS12925	0.37	+0.5
2,889,102	-		LRK54_RS12925	0.37	-0.0
2,889,125	+		LRK54_RS12925	0.40	-0.4
2,889,125	+		LRK54_RS12925	0.40	+1.0
2,889,125	+		LRK54_RS12925	0.40	+0.0
2,889,125	+		LRK54_RS12925	0.40	+0.8
2,889,125	+		LRK54_RS12925	0.40	-0.8
2,889,125	+		LRK54_RS12925	0.40	-2.0
2,889,125	+		LRK54_RS12925	0.40	-1.4
2,889,126	-		LRK54_RS12925	0.40	-0.0
2,889,126	-		LRK54_RS12925	0.40	-0.9
2,889,126	-		LRK54_RS12925	0.40	+0.4
2,889,126	-		LRK54_RS12925	0.40	-0.2
2,889,126	-		LRK54_RS12925	0.40	-1.0
2,889,126	-		LRK54_RS12925	0.40	-1.8
2,889,251	+		LRK54_RS12925	0.54	-0.6
2,889,251	+		LRK54_RS12925	0.54	-1.0
2,889,251	+		LRK54_RS12925	0.54	+0.2
2,889,251	+		LRK54_RS12925	0.54	+1.3
2,889,251	+		LRK54_RS12925	0.54	+0.4
2,889,251	+		LRK54_RS12925	0.54	-1.2
2,889,251	+		LRK54_RS12925	0.54	-1.9
2,889,251	+		LRK54_RS12925	0.54	-0.1
2,889,251	+		LRK54_RS12925	0.54	-0.7
2,889,251	+		LRK54_RS12925	0.54	-0.9
2,889,252	-		LRK54_RS12925	0.54	-0.4
2,889,252	-		LRK54_RS12925	0.54	-0.3
2,889,252	-		LRK54_RS12925	0.54	+0.1
2,889,252	-		LRK54_RS12925	0.54	+0.6
2,889,252	-		LRK54_RS12925	0.54	+0.5
2,889,252	-		LRK54_RS12925	0.54	-0.8
2,889,252	-		LRK54_RS12925	0.54	+2.0
2,889,252	-		LRK54_RS12925	0.54	+0.2
2,889,252	-		LRK54_RS12925	0.54	-0.2
2,889,252	-		LRK54_RS12925	0.54	+5.6
2,889,252	-		LRK54_RS12925	0.54	-0.4
2,889,252	-		LRK54_RS12925	0.54	+2.1
2,889,252	-		LRK54_RS12925	0.54	+1.1
2,889,252	-		LRK54_RS12925	0.54	-0.8
2,889,252	-		LRK54_RS12925	0.54	-0.4
2,889,252	-		LRK54_RS12925	0.54	-0.0
2,889,365	+		LRK54_RS12925	0.66	-0.3
2,889,365	+		LRK54_RS12925	0.66	+0.7
2,889,365	+		LRK54_RS12925	0.66	-0.7
2,889,365	+		LRK54_RS12925	0.66	+2.0
2,889,365	+		LRK54_RS12925	0.66	+1.5
2,889,366	-		LRK54_RS12925	0.66	+1.5
2,889,366	-		LRK54_RS12925	0.66	-1.8
2,889,366	-		LRK54_RS12925	0.66	+0.7
2,889,366	-		LRK54_RS12925	0.66	-1.5
2,889,366	-		LRK54_RS12925	0.66	-0.9
2,889,366	-		LRK54_RS12925	0.66	+2.0
2,889,366	-		LRK54_RS12925	0.66	+6.8
2,889,366	-		LRK54_RS12925	0.66	-0.1
2,889,371	+		LRK54_RS12925	0.67	+0.7
2,889,371	+		LRK54_RS12925	0.67	-0.9
2,889,371	+		LRK54_RS12925	0.67	-0.5
2,889,371	+		LRK54_RS12925	0.67	-0.4
2,889,371	+		LRK54_RS12925	0.67	+1.7
2,889,371	+		LRK54_RS12925	0.67	+0.2
2,889,371	+		LRK54_RS12925	0.67	+0.7
2,889,371	+		LRK54_RS12925	0.67	+0.5
2,889,371	+		LRK54_RS12925	0.67	+1.4
2,889,371	+		LRK54_RS12925	0.67	+0.7
2,889,371	+		LRK54_RS12925	0.67	-0.0
2,889,371	+		LRK54_RS12925	0.67	-0.3
2,889,371	+		LRK54_RS12925	0.67	-0.2
2,889,371	+		LRK54_RS12925	0.67	-0.1
2,889,372	-		LRK54_RS12925	0.67	-0.4
2,889,372	-		LRK54_RS12925	0.67	+0.5
2,889,372	-		LRK54_RS12925	0.67	-1.8
2,889,372	-		LRK54_RS12925	0.67	+0.7
2,889,372	-		LRK54_RS12925	0.67	+4.7
2,889,372	-		LRK54_RS12925	0.67	+1.2
2,889,372	-		LRK54_RS12925	0.67	+0.5
2,889,372	-		LRK54_RS12925	0.67	-1.8
2,889,372	-		LRK54_RS12925	0.67	-1.5
2,889,372	-		LRK54_RS12925	0.67	+0.3
2,889,372	-		LRK54_RS12925	0.67	-2.3
2,889,372	-		LRK54_RS12925	0.67	-0.9
2,889,372	-		LRK54_RS12925	0.67	+2.2
2,889,372	-		LRK54_RS12925	0.67	-0.0
2,889,372	-		LRK54_RS12925	0.67	-0.2
2,889,372	-		LRK54_RS12925	0.67	-1.4
2,889,372	-		LRK54_RS12925	0.67	-0.6
2,889,372	-		LRK54_RS12925	0.67	-0.8
2,889,372	-		LRK54_RS12925	0.67	-0.0
2,889,372	-		LRK54_RS12925	0.67	+0.3
2,889,372	-		LRK54_RS12925	0.67	-1.5
2,889,372	-		LRK54_RS12925	0.67	+0.5
2,889,372	-		LRK54_RS12925	0.67	+0.0
2,889,372	-		LRK54_RS12925	0.67	-0.3
2,889,372	-		LRK54_RS12925	0.67	-1.3
2,889,372	-		LRK54_RS12925	0.67	-0.5
2,889,372	-		LRK54_RS12925	0.67	+0.2
2,889,372	-		LRK54_RS12925	0.67	-0.5
2,889,399	+		LRK54_RS12925	0.70	+1.8
2,889,399	+		LRK54_RS12925	0.70	-0.9
2,889,399	+		LRK54_RS12925	0.70	+0.1
2,889,399	+		LRK54_RS12925	0.70	-0.0
2,889,399	+		LRK54_RS12925	0.70	+2.1
2,889,399	+		LRK54_RS12925	0.70	+0.5
2,889,399	+		LRK54_RS12925	0.70	+0.9
2,889,400	-		LRK54_RS12925	0.70	-0.6
2,889,400	-		LRK54_RS12925	0.70	-0.8
2,889,400	-		LRK54_RS12925	0.70	+0.7
2,889,400	-		LRK54_RS12925	0.70	-0.6
2,889,400	-		LRK54_RS12925	0.70	+1.0
2,889,400	-		LRK54_RS12925	0.70	+1.0
2,889,400	-		LRK54_RS12925	0.70	+0.9
2,889,400	-		LRK54_RS12925	0.70	+1.1
2,889,400	-		LRK54_RS12925	0.70	+0.2
2,889,400	-		LRK54_RS12925	0.70	+1.2
2,889,400	-		LRK54_RS12925	0.70	-0.5
2,889,400	-		LRK54_RS12925	0.70	+1.2
2,889,400	-		LRK54_RS12925	0.70	+0.5
2,889,400	-		LRK54_RS12925	0.70	+4.8
2,889,482	+		LRK54_RS12925	0.79	-1.3
2,889,482	+		LRK54_RS12925	0.79	+0.5
2,889,482	+		LRK54_RS12925	0.79	-0.4
2,889,482	+		LRK54_RS12925	0.79	-1.6
2,889,482	+		LRK54_RS12925	0.79	+1.7
2,889,482	+		LRK54_RS12925	0.79	+0.3
2,889,482	+		LRK54_RS12925	0.79	-0.8
2,889,482	+		LRK54_RS12925	0.79	-1.5
2,889,482	+		LRK54_RS12925	0.79	+0.5
2,889,482	+		LRK54_RS12925	0.79	-0.6
2,889,482	+		LRK54_RS12925	0.79	-0.7
2,889,482	+		LRK54_RS12925	0.79	-0.9
2,889,482	+		LRK54_RS12925	0.79	-2.2
2,889,482	+		LRK54_RS12925	0.79	+0.5
2,889,483	-		LRK54_RS12925	0.79	-0.3
2,889,483	-		LRK54_RS12925	0.79	-1.4
2,889,483	-		LRK54_RS12925	0.79	+1.0
2,889,483	-		LRK54_RS12925	0.79	-1.2
2,889,483	-		LRK54_RS12925	0.79	-0.2
2,889,483	-		LRK54_RS12925	0.79	-0.6
2,889,483	-		LRK54_RS12925	0.79	-0.7
2,889,483	-		LRK54_RS12925	0.79	-0.3
2,889,483	-		LRK54_RS12925	0.79	-0.3
2,889,545	+		LRK54_RS12925	0.86	-0.5
2,889,545	+		LRK54_RS12925	0.86	-0.6
2,889,545	+		LRK54_RS12925	0.86	-0.3
2,889,545	+		LRK54_RS12925	0.86	-2.2
2,889,545	+		LRK54_RS12925	0.86	-0.3
2,889,545	+		LRK54_RS12925	0.86	+1.4
2,889,545	+		LRK54_RS12925	0.86	-1.8
2,889,545	+		LRK54_RS12925	0.86	+0.1
2,889,545	+		LRK54_RS12925	0.86	+0.2
2,889,545	+		LRK54_RS12925	0.86	-0.3
2,889,545	+		LRK54_RS12925	0.86	-0.3
2,889,546	-		LRK54_RS12925	0.86	+1.1
2,889,546	-		LRK54_RS12925	0.86	+0.5
2,889,546	-		LRK54_RS12925	0.86	-2.2
2,889,546	-		LRK54_RS12925	0.86	-0.3
2,889,546	-		LRK54_RS12925	0.86	-0.7
2,889,546	-		LRK54_RS12925	0.86	-0.1
2,889,546	-		LRK54_RS12925	0.86	+1.2
2,889,546	-		LRK54_RS12925	0.86	-1.1
2,889,546	-		LRK54_RS12925	0.86	+1.2
2,889,546	-		LRK54_RS12925	0.86	-1.0
2,889,546	-		LRK54_RS12925	0.86	-0.6
2,889,546	-		LRK54_RS12925	0.86	+1.2
2,889,546	-		LRK54_RS12925	0.86	+1.9
2,889,546	-		LRK54_RS12925	0.86	-0.8
2,889,546	-		LRK54_RS12925	0.86	-0.5
2,889,546	-		LRK54_RS12925	0.86	-0.2
2,889,546	-		LRK54_RS12925	0.86	+1.0
2,889,546	-		LRK54_RS12925	0.86	-0.0
2,889,546	-		LRK54_RS12925	0.86	-1.4
2,889,546	-		LRK54_RS12925	0.86	-0.5
2,889,554	+		LRK54_RS12925	0.87	+0.7
2,889,554	+		LRK54_RS12925	0.87	-1.3
2,889,554	+		LRK54_RS12925	0.87	-1.5
2,889,555	-		LRK54_RS12925	0.87	-0.1
2,889,555	-		LRK54_RS12925	0.87	+0.2
2,889,555	-		LRK54_RS12925	0.87	-0.3
2,889,555	-		LRK54_RS12925	0.87	-1.7
2,889,555	-		LRK54_RS12925	0.87	-1.2
2,889,587	+				-0.4
2,889,587	+				+0.0
2,889,587	+				-1.1
2,889,587	+				-1.2
2,889,587	+				-2.1
2,889,587	+				-0.6
2,889,587	+				-0.3
2,889,587	+				-1.8
2,889,587	+				-1.3
2,889,587	+				+0.5
2,889,587	+				-0.7
2,889,587	+				+0.2
2,889,587	+				-1.5
2,889,587	+				-0.5
2,889,587	+				-2.3
2,889,587	+				-0.9
2,889,587	+				+0.1
2,889,587	+				-0.6
2,889,587	+				-0.4
2,889,587	+				-0.3
2,889,587	+				+0.2
2,889,587	+				+0.2
2,889,587	+				+1.0
2,889,587	+				+1.5
2,889,587	+				-1.7
2,889,587	+				-0.2
2,889,587	+				-2.1
2,889,587	+				-1.2
2,889,587	+				+1.0
2,889,587	+				-0.5
2,889,587	+				-0.8
2,889,587	+				+0.5
2,889,587	+				-0.4
2,889,588	-				-1.5
2,889,588	-				-1.0
2,889,588	-				+0.0
2,889,588	-				-0.5
2,889,588	-				-0.2
2,889,588	-				-0.6
2,889,588	-				-0.9
2,889,588	-				-0.9
2,889,588	-				-0.2
2,889,588	-				-0.4
2,889,588	-				+1.1
2,889,588	-				-0.3
2,889,588	-				-0.6
2,889,588	-				+0.7
2,889,588	-				+0.9
2,889,588	-				+1.1
2,889,588	-				-0.6
2,889,588	-				-0.3
2,889,588	-				+2.5
2,889,588	-				+0.1
2,889,588	-				+1.9
2,889,588	-				+0.4
2,889,588	-				+1.5
2,889,588	-				+0.5
2,889,588	-				+1.3
2,889,588	-				-0.3
2,889,656	+				+1.0
2,889,656	+				-0.5
2,889,656	+				-3.1
2,889,656	+				-1.8
2,889,656	+				+4.8
2,889,657	-				+0.4
2,889,657	-				+0.2
2,889,657	-				+0.2
2,889,657	-				-0.0