Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11180

Experiment: a-Cyclodextrin 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 20 mM
2,483,910	+		LRK54_RS11175	0.67	+2.6
2,483,910	+		LRK54_RS11175	0.67	+3.6
2,483,910	+		LRK54_RS11175	0.67	+4.8
2,483,910	+		LRK54_RS11175	0.67	+3.7
2,483,911	-		LRK54_RS11175	0.67	+3.9
2,483,911	-		LRK54_RS11175	0.67	+2.0
2,483,911	-		LRK54_RS11175	0.67	+3.1
2,483,911	-		LRK54_RS11175	0.67	+3.6
2,483,911	-		LRK54_RS11175	0.67	+3.6
2,483,913	+		LRK54_RS11175	0.67	+2.4
2,483,914	-		LRK54_RS11175	0.67	+2.2
2,484,088	-		LRK54_RS11175	0.73	-0.0
2,484,088	-		LRK54_RS11175	0.73	+2.0
2,484,147	+		LRK54_RS11175	0.75	+1.6
2,484,148	-		LRK54_RS11175	0.76	+1.9
2,484,148	-		LRK54_RS11175	0.76	+2.6
2,484,171	+		LRK54_RS11175	0.76	+3.2
2,484,171	+		LRK54_RS11175	0.76	+3.2
2,484,171	+		LRK54_RS11175	0.76	+3.6
2,484,171	+		LRK54_RS11175	0.76	+1.8
2,484,171	+		LRK54_RS11175	0.76	+2.3
2,484,171	+		LRK54_RS11175	0.76	+1.0
2,484,171	+		LRK54_RS11175	0.76	+2.4
2,484,172	-		LRK54_RS11175	0.76	+2.0
2,484,172	-		LRK54_RS11175	0.76	+3.3
2,484,174	+		LRK54_RS11175	0.76	+3.2
2,484,174	+		LRK54_RS11175	0.76	+3.2
2,484,174	+		LRK54_RS11175	0.76	+3.3
2,484,174	+		LRK54_RS11175	0.76	+1.2
2,484,174	+		LRK54_RS11175	0.76	+7.2
2,484,175	-		LRK54_RS11175	0.77	-0.0
2,484,175	-		LRK54_RS11175	0.77	+2.8
2,484,175	-		LRK54_RS11175	0.77	+0.2
2,484,198	+		LRK54_RS11175	0.77	+3.6
2,484,198	+		LRK54_RS11175	0.77	+0.2
2,484,198	+		LRK54_RS11175	0.77	+4.0
2,484,198	+		LRK54_RS11175	0.77	+1.6
2,484,198	+		LRK54_RS11175	0.77	+3.9
2,484,198	+		LRK54_RS11175	0.77	+4.2
2,484,199	-		LRK54_RS11175	0.77	+4.8
2,484,199	-		LRK54_RS11175	0.77	+4.2
2,484,199	-		LRK54_RS11175	0.77	+3.4
2,484,228	+		LRK54_RS11175	0.78	+4.0
2,484,229	-		LRK54_RS11175	0.78	+6.2
2,484,252	+		LRK54_RS11175	0.79	+4.2
2,484,252	+		LRK54_RS11175	0.79	+2.9
2,484,252	+		LRK54_RS11175	0.79	+1.6
2,484,252	+		LRK54_RS11175	0.79	+2.2
2,484,253	-		LRK54_RS11175	0.79	-0.0
2,484,253	-		LRK54_RS11175	0.79	+2.6
2,484,253	-		LRK54_RS11175	0.79	+4.6
2,484,253	-		LRK54_RS11175	0.79	+2.3
2,484,253	-		LRK54_RS11175	0.79	+1.6
2,484,253	-		LRK54_RS11175	0.79	+2.6
2,484,555	+				+1.2
2,484,556	-				+1.3
2,484,556	-				+5.0
2,484,556	-				+2.2
2,484,556	-				+2.6
2,484,556	-				+1.0
2,484,771	+				+4.0
2,484,772	-				+3.0
2,484,875	+				-0.7
2,484,875	+				+0.4
2,484,876	-				+0.4
2,484,876	-				+1.0
2,484,876	-				-1.2
2,484,876	-				-1.2
2,485,100	+		LRK54_RS11180	0.14	+0.6
2,485,100	+		LRK54_RS11180	0.14	-1.4
2,485,100	+		LRK54_RS11180	0.14	-0.5
2,485,100	+		LRK54_RS11180	0.14	-0.4
2,485,100	+		LRK54_RS11180	0.14	+0.6
2,485,100	+		LRK54_RS11180	0.14	+1.6
2,485,100	+		LRK54_RS11180	0.14	-0.4
2,485,100	+		LRK54_RS11180	0.14	-0.9
2,485,100	+		LRK54_RS11180	0.14	-0.4
2,485,100	+		LRK54_RS11180	0.14	+0.7
2,485,101	-		LRK54_RS11180	0.14	+0.2
2,485,101	-		LRK54_RS11180	0.14	+0.9
2,485,101	-		LRK54_RS11180	0.14	-0.2
2,485,101	-		LRK54_RS11180	0.14	-0.1
2,485,101	-		LRK54_RS11180	0.14	-2.6
2,485,101	-		LRK54_RS11180	0.14	+1.0
2,485,289	+		LRK54_RS11180	0.26	-0.2
2,485,289	+		LRK54_RS11180	0.26	+0.2
2,485,289	+		LRK54_RS11180	0.26	-0.4
2,485,289	+		LRK54_RS11180	0.26	+0.0
2,485,289	+		LRK54_RS11180	0.26	-0.1
2,485,289	+		LRK54_RS11180	0.26	-1.4
2,485,290	-		LRK54_RS11180	0.26	+2.0
2,485,290	-		LRK54_RS11180	0.26	+0.9
2,485,290	-		LRK54_RS11180	0.26	+0.4
2,485,290	-		LRK54_RS11180	0.26	-0.8
2,485,290	-		LRK54_RS11180	0.26	-0.9
2,485,290	-		LRK54_RS11180	0.26	+0.2
2,485,297	+		LRK54_RS11180	0.26	-2.1
2,485,297	+		LRK54_RS11180	0.26	-1.1
2,485,297	+		LRK54_RS11180	0.26	+1.0
2,485,297	+		LRK54_RS11180	0.26	+0.5
2,485,298	-		LRK54_RS11180	0.26	+1.0
2,485,298	-		LRK54_RS11180	0.26	+0.7
2,485,298	-		LRK54_RS11180	0.26	+2.6
2,485,298	-		LRK54_RS11180	0.26	+1.6
2,485,298	-		LRK54_RS11180	0.26	-1.0
2,485,298	-		LRK54_RS11180	0.26	-0.5
2,485,298	-		LRK54_RS11180	0.26	-0.4
2,485,298	-		LRK54_RS11180	0.26	+1.0
2,485,652	+		LRK54_RS11180	0.48	+1.0
2,485,652	+		LRK54_RS11180	0.48	-0.3
2,485,652	+		LRK54_RS11180	0.48	+1.1
2,485,652	+		LRK54_RS11180	0.48	+1.0
2,485,652	+		LRK54_RS11180	0.48	-1.1
2,485,652	+		LRK54_RS11180	0.48	-0.6
2,485,652	+		LRK54_RS11180	0.48	+0.6
2,485,652	+		LRK54_RS11180	0.48	+0.2
2,485,652	+		LRK54_RS11180	0.48	-2.2
2,485,652	+		LRK54_RS11180	0.48	-0.0
2,485,652	+		LRK54_RS11180	0.48	-0.6
2,485,652	+		LRK54_RS11180	0.48	-0.0
2,485,652	+		LRK54_RS11180	0.48	+0.8
2,485,652	+		LRK54_RS11180	0.48	-2.9
2,485,653	-		LRK54_RS11180	0.49	-2.3
2,485,653	-		LRK54_RS11180	0.49	-1.4
2,485,653	-		LRK54_RS11180	0.49	-1.4
2,485,653	-		LRK54_RS11180	0.49	-1.7
2,485,653	-		LRK54_RS11180	0.49	-0.7
2,485,653	-		LRK54_RS11180	0.49	+0.4
2,485,653	-		LRK54_RS11180	0.49	-0.4
2,485,653	-		LRK54_RS11180	0.49	+5.7
2,485,653	-		LRK54_RS11180	0.49	-1.0
2,485,760	+		LRK54_RS11180	0.55	-2.0
2,485,760	+		LRK54_RS11180	0.55	+0.6
2,485,760	+		LRK54_RS11180	0.55	-0.2
2,485,761	-		LRK54_RS11180	0.55	-0.8
2,485,761	-		LRK54_RS11180	0.55	-1.6
2,485,761	-		LRK54_RS11180	0.55	+2.1
2,485,761	-		LRK54_RS11180	0.55	+0.7
2,486,082	-		LRK54_RS11180	0.75	+0.6
2,486,082	-		LRK54_RS11180	0.75	-0.3
2,486,279	+		LRK54_RS11180	0.88	-0.1
2,486,279	+		LRK54_RS11180	0.88	+1.6
2,486,280	-		LRK54_RS11180	0.88	-0.2
2,486,510	+				-2.2
2,486,510	+				-1.0
2,486,510	+				-0.3
2,486,510	+				-0.4
2,486,510	+				-1.7
2,486,510	+				+0.2
2,486,510	+				+0.6
2,486,511	-				-2.0
2,486,511	-				-0.2
2,486,511	-				-0.6
2,486,511	-				+1.8
2,486,511	-				-0.8
2,486,511	-				+1.0
2,486,511	-				+0.5
2,486,511	-				+1.6
2,486,511	-				+2.6
2,486,511	-				-0.7
2,486,511	-				+0.6
2,486,511	-				+3.6
2,486,511	-				+1.1
2,486,737	+		LRK54_RS11185	0.37	+0.3
2,486,743	+		LRK54_RS11185	0.39	-0.6
2,486,743	+		LRK54_RS11185	0.39	-1.6
2,486,743	+		LRK54_RS11185	0.39	-0.1
2,486,743	+		LRK54_RS11185	0.39	-0.0
2,486,743	+		LRK54_RS11185	0.39	+0.2
2,486,743	+		LRK54_RS11185	0.39	+0.2
2,486,743	+		LRK54_RS11185	0.39	-1.0
2,486,743	+		LRK54_RS11185	0.39	-0.9
2,486,743	+		LRK54_RS11185	0.39	+3.1
2,486,743	+		LRK54_RS11185	0.39	-0.4
2,486,743	+		LRK54_RS11185	0.39	+1.3
2,486,743	+		LRK54_RS11185	0.39	+1.0
2,486,743	+		LRK54_RS11185	0.39	-0.4
2,486,743	+		LRK54_RS11185	0.39	+0.6
2,486,743	+		LRK54_RS11185	0.39	+0.6
2,486,743	+		LRK54_RS11185	0.39	-1.1
2,486,743	+		LRK54_RS11185	0.39	+1.6
2,486,743	+		LRK54_RS11185	0.39	+1.9
2,486,743	+		LRK54_RS11185	0.39	-0.4
2,486,743	+		LRK54_RS11185	0.39	-2.5
2,486,743	+		LRK54_RS11185	0.39	-0.8
2,486,743	+		LRK54_RS11185	0.39	+1.0
2,486,743	+		LRK54_RS11185	0.39	-0.8
2,486,743	+		LRK54_RS11185	0.39	-1.4
2,486,743	+		LRK54_RS11185	0.39	-2.6
2,486,743	+		LRK54_RS11185	0.39	-0.4
2,486,743	+		LRK54_RS11185	0.39	-0.4
2,486,743	+		LRK54_RS11185	0.39	-2.1
2,486,743	+		LRK54_RS11185	0.39	+7.0
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	-1.2
2,486,744	-		LRK54_RS11185	0.39	-1.7
2,486,744	-		LRK54_RS11185	0.39	-0.8
2,486,744	-		LRK54_RS11185	0.39	+1.6
2,486,744	-		LRK54_RS11185	0.39	+0.8
2,486,744	-		LRK54_RS11185	0.39	-0.6
2,486,744	-		LRK54_RS11185	0.39	-1.0
2,486,744	-		LRK54_RS11185	0.39	-0.4
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	+2.0
2,486,744	-		LRK54_RS11185	0.39	-0.6
2,486,744	-		LRK54_RS11185	0.39	+0.8
2,486,744	-		LRK54_RS11185	0.39	-1.7
2,486,744	-		LRK54_RS11185	0.39	+1.2
2,486,744	-		LRK54_RS11185	0.39	-1.8
2,486,744	-		LRK54_RS11185	0.39	+1.0
2,486,744	-		LRK54_RS11185	0.39	-1.8
2,486,744	-		LRK54_RS11185	0.39	-1.7
2,486,744	-		LRK54_RS11185	0.39	-1.4
2,486,744	-		LRK54_RS11185	0.39	+0.2
2,486,744	-		LRK54_RS11185	0.39	-0.8
2,486,744	-		LRK54_RS11185	0.39	-0.7
2,486,744	-		LRK54_RS11185	0.39	+2.2
2,486,744	-		LRK54_RS11185	0.39	-2.2
2,486,744	-		LRK54_RS11185	0.39	-0.0
2,486,744	-		LRK54_RS11185	0.39	-0.6
2,486,744	-		LRK54_RS11185	0.39	-0.7
2,486,744	-		LRK54_RS11185	0.39	-0.6
2,486,744	-		LRK54_RS11185	0.39	+1.4
2,486,744	-		LRK54_RS11185	0.39	-0.2
2,486,744	-		LRK54_RS11185	0.39	-0.8
2,486,774	+		LRK54_RS11185	0.48	+0.2
2,486,794	+		LRK54_RS11185	0.55	-0.5
2,486,794	+		LRK54_RS11185	0.55	-0.4
2,486,794	+		LRK54_RS11185	0.55	-0.4
2,486,795	-		LRK54_RS11185	0.55	-2.3
2,486,795	-		LRK54_RS11185	0.55	-0.4
2,486,795	-		LRK54_RS11185	0.55	+0.2
2,486,795	-		LRK54_RS11185	0.55	-1.0
2,486,845	+		LRK54_RS11185	0.70	+3.0
2,486,845	+		LRK54_RS11185	0.70	-1.0
2,486,845	+		LRK54_RS11185	0.70	-1.9
2,486,846	-		LRK54_RS11185	0.71	-0.4
2,486,846	-		LRK54_RS11185	0.71	-1.0
2,486,846	-		LRK54_RS11185	0.71	+1.0
2,486,846	-		LRK54_RS11185	0.71	-0.9
2,486,846	-		LRK54_RS11185	0.71	+1.0
2,486,846	-		LRK54_RS11185	0.71	+1.8
2,486,881	+		LRK54_RS11185	0.82	+0.1
2,486,881	+		LRK54_RS11185	0.82	+0.3
2,486,923	-				+0.2
2,486,998	+				-1.3
2,486,999	-				-1.0
2,486,999	-				+0.6
2,486,999	-				+0.7
2,486,999	-				-0.4
2,486,999	-				+1.0
2,486,999	-				-1.7
2,486,999	-				-0.0
2,486,999	-				-0.6
2,486,999	-				-1.0
2,487,041	+				+0.4
2,487,071	+				+1.0
2,487,072	-				+6.1
2,487,072	-				+1.6
2,487,072	-				-0.9
2,487,239	+		LRK54_RS11190	0.32	+0.1
2,487,239	+		LRK54_RS11190	0.32	+1.0
2,487,239	+		LRK54_RS11190	0.32	+0.1
2,487,239	+		LRK54_RS11190	0.32	-0.6
2,487,239	+		LRK54_RS11190	0.32	-0.4
2,487,239	+		LRK54_RS11190	0.32	+0.2
2,487,239	+		LRK54_RS11190	0.32	-0.3
2,487,239	+		LRK54_RS11190	0.32	-0.4
2,487,239	+		LRK54_RS11190	0.32	+1.3
2,487,240	-		LRK54_RS11190	0.32	-0.2
2,487,240	-		LRK54_RS11190	0.32	-1.1
2,487,240	-		LRK54_RS11190	0.32	-1.5
2,487,240	-		LRK54_RS11190	0.32	-1.0
2,487,240	-		LRK54_RS11190	0.32	-1.0
2,487,398	+		LRK54_RS11190	0.55	+2.3
2,487,398	+		LRK54_RS11190	0.55	-1.8
2,487,398	+		LRK54_RS11190	0.55	-0.5
2,487,399	-		LRK54_RS11190	0.55	+0.2
2,487,399	-		LRK54_RS11190	0.55	+0.2
2,487,399	-		LRK54_RS11190	0.55	+0.2
2,487,399	-		LRK54_RS11190	0.55	+0.3
2,487,399	-		LRK54_RS11190	0.55	-0.6
2,487,410	+		LRK54_RS11190	0.57	-0.7
2,487,410	+		LRK54_RS11190	0.57	+1.6
2,487,410	+		LRK54_RS11190	0.57	-0.4
2,487,410	+		LRK54_RS11190	0.57	+0.6
2,487,410	+		LRK54_RS11190	0.57	-2.2
2,487,410	+		LRK54_RS11190	0.57	+0.3
2,487,410	+		LRK54_RS11190	0.57	-0.6
2,487,410	+		LRK54_RS11190	0.57	-2.5
2,487,410	+		LRK54_RS11190	0.57	+0.2
2,487,410	+		LRK54_RS11190	0.57	-1.1
2,487,410	+		LRK54_RS11190	0.57	-0.2
2,487,410	+		LRK54_RS11190	0.57	-1.1
2,487,410	+		LRK54_RS11190	0.57	-0.2
2,487,410	+		LRK54_RS11190	0.57	-1.0
2,487,410	+		LRK54_RS11190	0.57	-0.0
2,487,411	-		LRK54_RS11190	0.57	-2.2
2,487,411	-		LRK54_RS11190	0.57	-1.5
2,487,411	-		LRK54_RS11190	0.57	-1.0
2,487,411	-		LRK54_RS11190	0.57	+0.6
2,487,411	-		LRK54_RS11190	0.57	+1.0
2,487,411	-		LRK54_RS11190	0.57	-0.2
2,487,411	-		LRK54_RS11190	0.57	-2.1
2,487,411	-		LRK54_RS11190	0.57	+1.0
2,487,411	-		LRK54_RS11190	0.57	-1.0
2,487,411	-		LRK54_RS11190	0.57	+0.1
2,487,411	-		LRK54_RS11190	0.57	-0.7