Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10445

Experiment: a-Cyclodextrin 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 20 mM
2,303,705	+		LRK54_RS10440	0.63	-1.9
2,303,705	+		LRK54_RS10440	0.63	-0.6
2,303,705	+		LRK54_RS10440	0.63	-2.2
2,303,705	+		LRK54_RS10440	0.63	-0.0
2,303,705	+		LRK54_RS10440	0.63	+0.4
2,303,705	+		LRK54_RS10440	0.63	-0.6
2,303,706	-		LRK54_RS10440	0.63	+0.0
2,303,706	-		LRK54_RS10440	0.63	-1.0
2,303,762	+		LRK54_RS10440	0.65	+1.4
2,303,762	+		LRK54_RS10440	0.65	-1.1
2,303,762	+		LRK54_RS10440	0.65	-1.1
2,303,762	+		LRK54_RS10440	0.65	-0.3
2,303,762	+		LRK54_RS10440	0.65	-0.8
2,303,762	+		LRK54_RS10440	0.65	+1.6
2,303,762	+		LRK54_RS10440	0.65	+0.9
2,303,762	+		LRK54_RS10440	0.65	-1.9
2,303,762	+		LRK54_RS10440	0.65	+0.3
2,303,762	+		LRK54_RS10440	0.65	+0.1
2,303,763	-		LRK54_RS10440	0.65	-0.0
2,303,763	-		LRK54_RS10440	0.65	+2.6
2,303,763	-		LRK54_RS10440	0.65	+1.0
2,303,763	-		LRK54_RS10440	0.65	-0.2
2,303,798	+		LRK54_RS10440	0.67	+0.0
2,303,798	+		LRK54_RS10440	0.67	-0.7
2,303,798	+		LRK54_RS10440	0.67	+0.3
2,303,798	+		LRK54_RS10440	0.67	-1.6
2,303,798	+		LRK54_RS10440	0.67	-0.4
2,303,798	+		LRK54_RS10440	0.67	-1.4
2,303,798	+		LRK54_RS10440	0.67	-2.6
2,303,798	+		LRK54_RS10440	0.67	-0.7
2,303,798	+		LRK54_RS10440	0.67	-0.6
2,303,798	+		LRK54_RS10440	0.67	-0.5
2,303,798	+		LRK54_RS10440	0.67	-1.3
2,303,799	-		LRK54_RS10440	0.67	+0.5
2,303,799	-		LRK54_RS10440	0.67	-0.5
2,303,799	-		LRK54_RS10440	0.67	+0.3
2,303,799	-		LRK54_RS10440	0.67	+0.4
2,303,799	-		LRK54_RS10440	0.67	-0.6
2,303,799	-		LRK54_RS10440	0.67	-0.1
2,303,799	-		LRK54_RS10440	0.67	+2.6
2,303,799	-		LRK54_RS10440	0.67	-0.2
2,303,963	+		LRK54_RS10440	0.74	-1.3
2,303,963	+		LRK54_RS10440	0.74	-1.7
2,303,963	+		LRK54_RS10440	0.74	-1.6
2,303,963	+		LRK54_RS10440	0.74	-1.3
2,303,963	+		LRK54_RS10440	0.74	+1.0
2,303,963	+		LRK54_RS10440	0.74	+1.4
2,303,963	+		LRK54_RS10440	0.74	+0.1
2,303,963	+		LRK54_RS10440	0.74	-0.6
2,303,963	+		LRK54_RS10440	0.74	+1.3
2,303,964	-		LRK54_RS10440	0.74	-1.6
2,303,964	-		LRK54_RS10440	0.74	+0.3
2,303,964	-		LRK54_RS10440	0.74	-0.6
2,304,038	+		LRK54_RS10440	0.77	-0.6
2,304,038	+		LRK54_RS10440	0.77	+1.0
2,304,038	+		LRK54_RS10440	0.77	+0.7
2,304,038	+		LRK54_RS10440	0.77	-1.0
2,304,116	+		LRK54_RS10440	0.81	-1.5
2,304,116	+		LRK54_RS10440	0.81	-1.4
2,304,116	+		LRK54_RS10440	0.81	+0.2
2,304,116	+		LRK54_RS10440	0.81	-1.1
2,304,116	+		LRK54_RS10440	0.81	-1.5
2,304,116	+		LRK54_RS10440	0.81	+0.0
2,304,117	-		LRK54_RS10440	0.81	-1.1
2,304,117	-		LRK54_RS10440	0.81	+2.6
2,304,117	-		LRK54_RS10440	0.81	-1.0
2,304,117	-		LRK54_RS10440	0.81	+0.7
2,304,117	-		LRK54_RS10440	0.81	+0.3
2,304,117	-		LRK54_RS10440	0.81	-2.2
2,304,117	-		LRK54_RS10440	0.81	-0.7
2,304,117	-		LRK54_RS10440	0.81	-1.2
2,304,131	+		LRK54_RS10440	0.81	-1.0
2,304,131	+		LRK54_RS10440	0.81	-0.8
2,304,131	+		LRK54_RS10440	0.81	+0.5
2,304,131	+		LRK54_RS10440	0.81	+1.6
2,304,131	+		LRK54_RS10440	0.81	-0.2
2,304,132	-		LRK54_RS10440	0.82	+1.3
2,304,132	-		LRK54_RS10440	0.82	+0.2
2,304,132	-		LRK54_RS10440	0.82	-0.4
2,304,132	-		LRK54_RS10440	0.82	-0.7
2,304,132	-		LRK54_RS10440	0.82	+0.3
2,304,132	-		LRK54_RS10440	0.82	+4.0
2,304,132	-		LRK54_RS10440	0.82	-1.0
2,304,132	-		LRK54_RS10440	0.82	-1.4
2,304,132	-		LRK54_RS10440	0.82	-1.7
2,304,147	-		LRK54_RS10440	0.82	+0.3
2,304,158	+		LRK54_RS10440	0.83	-0.7
2,304,158	+		LRK54_RS10440	0.83	+0.6
2,304,159	-		LRK54_RS10440	0.83	-0.8
2,304,281	+		LRK54_RS10440	0.88	-0.0
2,304,281	+		LRK54_RS10440	0.88	-0.7
2,304,281	+		LRK54_RS10440	0.88	-1.1
2,304,281	+		LRK54_RS10440	0.88	+0.4
2,304,282	-		LRK54_RS10440	0.88	+1.2
2,304,282	-		LRK54_RS10440	0.88	-0.4
2,304,282	-		LRK54_RS10440	0.88	-1.6
2,304,282	-		LRK54_RS10440	0.88	-0.0
2,304,296	+		LRK54_RS10440	0.89	-0.8
2,304,296	+		LRK54_RS10440	0.89	-0.6
2,304,296	+		LRK54_RS10440	0.89	-0.2
2,304,297	-		LRK54_RS10440	0.89	-1.8
2,304,297	-		LRK54_RS10440	0.89	-0.1
2,304,297	-		LRK54_RS10440	0.89	+1.6
2,304,297	-		LRK54_RS10440	0.89	-0.6
2,304,297	-		LRK54_RS10440	0.89	-0.3
2,304,297	-		LRK54_RS10440	0.89	-0.7
2,304,299	+		LRK54_RS10440	0.89	-0.6
2,304,299	+		LRK54_RS10440	0.89	-1.1
2,304,299	+		LRK54_RS10440	0.89	-0.2
2,304,299	+		LRK54_RS10440	0.89	+1.2
2,304,299	+		LRK54_RS10440	0.89	-1.1
2,304,299	+		LRK54_RS10440	0.89	+1.7
2,304,299	+		LRK54_RS10440	0.89	+0.0
2,304,299	+		LRK54_RS10440	0.89	+0.1
2,304,299	+		LRK54_RS10440	0.89	-1.0
2,304,299	+		LRK54_RS10440	0.89	+0.4
2,304,299	+		LRK54_RS10440	0.89	+0.6
2,304,299	+		LRK54_RS10440	0.89	+1.9
2,304,299	+		LRK54_RS10440	0.89	+0.5
2,304,299	+		LRK54_RS10440	0.89	+1.6
2,304,299	+		LRK54_RS10440	0.89	-1.1
2,304,299	+		LRK54_RS10440	0.89	-1.4
2,304,299	+		LRK54_RS10440	0.89	-0.6
2,304,300	-		LRK54_RS10440	0.89	-0.2
2,304,300	-		LRK54_RS10440	0.89	+0.3
2,304,300	-		LRK54_RS10440	0.89	-0.1
2,304,300	-		LRK54_RS10440	0.89	+0.7
2,304,300	-		LRK54_RS10440	0.89	-0.1
2,304,300	-		LRK54_RS10440	0.89	+2.0
2,304,300	-		LRK54_RS10440	0.89	-0.0
2,304,300	-		LRK54_RS10440	0.89	-1.5
2,304,300	-		LRK54_RS10440	0.89	-0.8
2,304,300	-		LRK54_RS10440	0.89	-0.3
2,304,300	-		LRK54_RS10440	0.89	+4.5
2,304,300	-		LRK54_RS10440	0.89	+0.5
2,304,300	-		LRK54_RS10440	0.89	-2.1
2,304,300	-		LRK54_RS10440	0.89	+0.2
2,304,300	-		LRK54_RS10440	0.89	+1.0
2,304,300	-		LRK54_RS10440	0.89	-1.8
2,304,300	-		LRK54_RS10440	0.89	+0.4
2,304,300	-		LRK54_RS10440	0.89	-0.5
2,304,305	+		LRK54_RS10440	0.89	+0.3
2,304,305	+		LRK54_RS10440	0.89	-1.0
2,304,305	+		LRK54_RS10440	0.89	-0.7
2,304,305	+		LRK54_RS10440	0.89	+0.1
2,304,305	+		LRK54_RS10440	0.89	-1.7
2,304,305	+		LRK54_RS10440	0.89	+0.6
2,304,305	+		LRK54_RS10440	0.89	-0.5
2,304,305	+		LRK54_RS10440	0.89	-1.0
2,304,305	+		LRK54_RS10440	0.89	+1.6
2,304,305	+		LRK54_RS10440	0.89	-0.2
2,304,305	+		LRK54_RS10440	0.89	-0.4
2,304,305	+		LRK54_RS10440	0.89	-0.4
2,304,305	+		LRK54_RS10440	0.89	-1.2
2,304,305	+		LRK54_RS10440	0.89	-0.2
2,304,305	+		LRK54_RS10440	0.89	-1.5
2,304,306	-		LRK54_RS10440	0.89	-2.5
2,304,306	-		LRK54_RS10440	0.89	+4.8
2,304,306	-		LRK54_RS10440	0.89	-1.5
2,304,306	-		LRK54_RS10440	0.89	+0.6
2,304,306	-		LRK54_RS10440	0.89	-0.8
2,304,306	-		LRK54_RS10440	0.89	-1.4
2,304,306	-		LRK54_RS10440	0.89	-1.7
2,304,306	-		LRK54_RS10440	0.89	-1.1
2,304,306	-		LRK54_RS10440	0.89	-0.2
2,304,306	-		LRK54_RS10440	0.89	-1.1
2,304,306	-		LRK54_RS10440	0.89	+0.4
2,304,332	+				+1.8
2,304,333	-				+1.0
2,304,333	-				-0.2
2,304,359	+				+2.5
2,304,360	-				-0.7
2,304,434	+				-1.1
2,304,434	+				-0.2
2,304,434	+				+0.3
2,304,434	+				+0.6
2,304,434	+				-0.3
2,304,434	+				+1.1
2,304,434	+				+0.4
2,304,434	+				-0.7
2,304,434	+				-1.8
2,304,434	+				-2.3
2,304,434	+				-1.0
2,304,435	-				-2.7
2,304,435	-				-2.4
2,304,435	-				-0.8
2,304,435	-				+0.0
2,304,435	-				+2.6
2,304,435	-				+1.6
2,304,435	-				+0.3
2,304,435	-				+0.6
2,304,435	-				-3.1
2,304,435	-				-1.7
2,304,435	-				-2.4
2,304,435	-				+1.7
2,304,435	-				+1.8
2,304,435	-				-1.1
2,304,435	-				+2.0
2,304,435	-				-1.0
2,304,435	-				+0.2
2,304,435	-				+0.9
2,304,435	-				+1.0
2,304,435	-				-1.5
2,304,435	-				+0.3
2,304,435	-				+0.6
2,304,435	-				-1.1
2,304,437	+				-0.4
2,304,437	+				+1.6
2,304,437	+				+1.6
2,304,437	+				-1.0
2,304,437	+				+1.1
2,304,438	-				-1.8
2,304,438	-				-0.4
2,304,438	-				-0.6
2,304,438	-				-0.5
2,304,438	-				+1.4
2,304,438	-				-0.2
2,304,438	-				+1.9
2,304,438	-				-1.0
2,304,438	-				-0.1
2,304,438	-				-0.7
2,305,043	-		LRK54_RS10445	0.58	-0.5
2,305,061	+		LRK54_RS10445	0.60	-0.6
2,305,061	+		LRK54_RS10445	0.60	-1.3
2,305,061	+		LRK54_RS10445	0.60	+0.4
2,305,061	+		LRK54_RS10445	0.60	+0.6
2,305,061	+		LRK54_RS10445	0.60	+4.3
2,305,062	-		LRK54_RS10445	0.60	-0.4
2,305,062	-		LRK54_RS10445	0.60	+2.6
2,305,062	-		LRK54_RS10445	0.60	-2.0
2,305,062	-		LRK54_RS10445	0.60	-0.9
2,305,062	-		LRK54_RS10445	0.60	-0.6
2,305,111	+		LRK54_RS10445	0.67	-0.1
2,305,111	+		LRK54_RS10445	0.67	-0.1
2,305,111	+		LRK54_RS10445	0.67	+1.0
2,305,111	+		LRK54_RS10445	0.67	-0.6
2,305,111	+		LRK54_RS10445	0.67	-0.5
2,305,111	+		LRK54_RS10445	0.67	+4.3
2,305,111	+		LRK54_RS10445	0.67	-2.4
2,305,112	-		LRK54_RS10445	0.67	-0.3
2,305,112	-		LRK54_RS10445	0.67	+0.1
2,305,112	-		LRK54_RS10445	0.67	+0.5
2,305,112	-		LRK54_RS10445	0.67	+1.0
2,305,112	-		LRK54_RS10445	0.67	-0.5
2,305,112	-		LRK54_RS10445	0.67	+0.3
2,305,211	+		LRK54_RS10445	0.80	+0.3
2,305,211	+		LRK54_RS10445	0.80	-1.0
2,305,211	+		LRK54_RS10445	0.80	+1.6
2,305,211	+		LRK54_RS10445	0.80	+0.1
2,305,211	+		LRK54_RS10445	0.80	+0.0
2,305,212	-		LRK54_RS10445	0.80	-0.6
2,305,212	-		LRK54_RS10445	0.80	-1.8
2,305,212	-		LRK54_RS10445	0.80	-1.0
2,305,212	-		LRK54_RS10445	0.80	+0.5
2,305,212	-		LRK54_RS10445	0.80	-0.4
2,305,212	-		LRK54_RS10445	0.80	-0.7
2,305,294	+				+2.6
2,305,294	+				+1.6
2,305,294	+				-2.2
2,305,294	+				-0.5
2,305,294	+				-2.0
2,305,294	+				+1.8
2,305,295	-				-2.3
2,305,295	-				-1.8
2,305,295	-				-2.6
2,305,295	-				-1.8
2,305,295	-				-0.1
2,305,297	+				-2.2
2,305,297	+				-1.0
2,305,297	+				+2.0
2,305,297	+				-0.2
2,305,297	+				-1.0
2,305,297	+				-0.7
2,305,298	-				+1.1
2,305,298	-				-1.7
2,305,298	-				+1.1
2,305,298	-				+0.0
2,305,298	-				-0.7
2,305,298	-				-1.5
2,305,298	-				+1.0
2,305,298	-				+0.0
2,305,298	-				+1.5
2,305,298	-				+1.6
2,305,298	-				-0.8
2,305,298	-				-0.3
2,305,458	+				+1.0
2,305,458	+				-0.2
2,305,459	-				-1.1
2,305,459	-				-2.4
2,305,459	-				-1.1
2,305,548	+		LRK54_RS10450	0.15	-0.2
2,305,548	+		LRK54_RS10450	0.15	+0.8
2,305,548	+		LRK54_RS10450	0.15	+2.6
2,305,548	+		LRK54_RS10450	0.15	-1.0
2,305,548	+		LRK54_RS10450	0.15	-1.3
2,305,548	+		LRK54_RS10450	0.15	+1.4
2,305,548	+		LRK54_RS10450	0.15	+1.2
2,305,548	+		LRK54_RS10450	0.15	-1.4
2,305,548	+		LRK54_RS10450	0.15	-1.0
2,305,548	+		LRK54_RS10450	0.15	-1.0
2,305,548	+		LRK54_RS10450	0.15	+1.6
2,305,548	+		LRK54_RS10450	0.15	+0.0
2,305,548	+		LRK54_RS10450	0.15	-1.4
2,305,548	+		LRK54_RS10450	0.15	+1.0
2,305,548	+		LRK54_RS10450	0.15	+0.3
2,305,548	+		LRK54_RS10450	0.15	-1.0
2,305,548	+		LRK54_RS10450	0.15	-1.3
2,305,548	+		LRK54_RS10450	0.15	-0.3
2,305,548	+		LRK54_RS10450	0.15	-0.5
2,305,548	+		LRK54_RS10450	0.15	+0.3
2,305,548	+		LRK54_RS10450	0.15	-0.2
2,305,548	+		LRK54_RS10450	0.15	+7.3
2,305,548	+		LRK54_RS10450	0.15	+0.0
2,305,548	+		LRK54_RS10450	0.15	-0.0
2,305,548	+		LRK54_RS10450	0.15	+1.3
2,305,548	+		LRK54_RS10450	0.15	+0.0
2,305,548	+		LRK54_RS10450	0.15	+1.8
2,305,548	+		LRK54_RS10450	0.15	+0.6
2,305,548	+		LRK54_RS10450	0.15	-1.0
2,305,548	+		LRK54_RS10450	0.15	+0.2
2,305,548	+		LRK54_RS10450	0.15	-0.9
2,305,548	+		LRK54_RS10450	0.15	+0.8
2,305,548	+		LRK54_RS10450	0.15	+0.5
2,305,548	+		LRK54_RS10450	0.15	-0.6
2,305,548	+		LRK54_RS10450	0.15	-0.9
2,305,548	+		LRK54_RS10450	0.15	-1.9
2,305,548	+		LRK54_RS10450	0.15	-0.4
2,305,548	+		LRK54_RS10450	0.15	+1.4
2,305,549	-		LRK54_RS10450	0.15	+0.5
2,305,549	-		LRK54_RS10450	0.15	+1.6
2,305,549	-		LRK54_RS10450	0.15	+0.5
2,305,549	-		LRK54_RS10450	0.15	+0.2
2,305,549	-		LRK54_RS10450	0.15	+0.3
2,305,549	-		LRK54_RS10450	0.15	+0.8
2,305,549	-		LRK54_RS10450	0.15	-1.2
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2,305,719	+		LRK54_RS10450	0.29	-1.1
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