Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08445

Experiment: a-Cyclodextrin 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS08435 and LRK54_RS08440 are separated by 84 nucleotidesLRK54_RS08440 and LRK54_RS08445 are separated by 88 nucleotidesLRK54_RS08445 and LRK54_RS08450 are separated by 4 nucleotidesLRK54_RS08450 and LRK54_RS08455 are separated by 11 nucleotides LRK54_RS08435: LRK54_RS08435 - 4'-phosphopantetheinyl transferase superfamily protein, at 1,840,724 to 1,841,368 _RS08435 LRK54_RS08440: LRK54_RS08440 - pyridoxine 5'-phosphate synthase, at 1,841,453 to 1,842,196 _RS08440 LRK54_RS08445: LRK54_RS08445 - biopolymer transporter ExbD, at 1,842,285 to 1,842,689 _RS08445 LRK54_RS08450: LRK54_RS08450 - biopolymer transporter ExbD, at 1,842,694 to 1,843,116 _RS08450 LRK54_RS08455: LRK54_RS08455 - MotA/TolQ/ExbB proton channel family protein, at 1,843,128 to 1,843,901 _RS08455 Position (kb) 1842 1843Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 1843.103 kb on - strandat 1843.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 20 mM
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1,843,103 - +8.7
1,843,103 - +8.9

Or see this region's nucleotide sequence