Experiment: a-Cyclodextrin 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04440 and LRK54_RS04445 are separated by 103 nucleotides LRK54_RS04445 and LRK54_RS04450 are separated by 177 nucleotides
LRK54_RS04440: LRK54_RS04440 - ABC transporter permease, at 939,620 to 940,930
_RS04440
LRK54_RS04445: LRK54_RS04445 - ABC transporter ATP-binding protein, at 941,034 to 941,750
_RS04445
LRK54_RS04450: LRK54_RS04450 - efflux RND transporter periplasmic adaptor subunit, at 941,928 to 943,199
_RS04450
Position (kb) 941
942 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.116 kb on + strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.117 kb on - strand, within LRK54_RS04440 at 940.138 kb on - strand, within LRK54_RS04440 at 940.138 kb on - strand, within LRK54_RS04440 at 940.138 kb on - strand, within LRK54_RS04440 at 940.206 kb on + strand, within LRK54_RS04440 at 940.206 kb on + strand, within LRK54_RS04440 at 940.206 kb on + strand, within LRK54_RS04440 at 940.207 kb on - strand, within LRK54_RS04440 at 940.207 kb on - strand, within LRK54_RS04440 at 940.207 kb on - strand, within LRK54_RS04440 at 940.207 kb on - strand, within LRK54_RS04440 at 940.207 kb on - strand, within LRK54_RS04440 at 940.207 kb on - strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.224 kb on + strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.225 kb on - strand, within LRK54_RS04440 at 940.262 kb on - strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.299 kb on + strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.300 kb on - strand, within LRK54_RS04440 at 940.344 kb on + strand, within LRK54_RS04440 at 940.344 kb on + strand, within LRK54_RS04440 at 940.344 kb on + strand, within LRK54_RS04440 at 940.344 kb on + strand, within LRK54_RS04440 at 940.387 kb on + strand, within LRK54_RS04440 at 940.387 kb on + strand, within LRK54_RS04440 at 940.387 kb on + strand, within LRK54_RS04440 at 940.387 kb on + strand, within LRK54_RS04440 at 940.392 kb on + strand, within LRK54_RS04440 at 940.392 kb on + strand, within LRK54_RS04440 at 940.392 kb on + strand, within LRK54_RS04440 at 940.392 kb on + strand, within LRK54_RS04440 at 940.393 kb on - strand, within LRK54_RS04440 at 940.393 kb on - strand, within LRK54_RS04440 at 940.635 kb on + strand, within LRK54_RS04440 at 940.636 kb on - strand, within LRK54_RS04440 at 940.690 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.692 kb on + strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.693 kb on - strand, within LRK54_RS04440 at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.917 kb on + strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.918 kb on - strand at 940.920 kb on + strand at 940.920 kb on + strand at 940.920 kb on + strand at 940.920 kb on + strand at 940.920 kb on + strand at 940.920 kb on + strand at 940.920 kb on + strand at 940.921 kb on - strand at 940.921 kb on - strand at 940.921 kb on - strand at 941.422 kb on + strand, within LRK54_RS04445 at 941.566 kb on + strand, within LRK54_RS04445 at 941.566 kb on + strand, within LRK54_RS04445 at 941.566 kb on + strand, within LRK54_RS04445 at 941.566 kb on + strand, within LRK54_RS04445 at 941.566 kb on + strand, within LRK54_RS04445 at 941.567 kb on - strand, within LRK54_RS04445 at 941.567 kb on - strand, within LRK54_RS04445 at 941.567 kb on - strand, within LRK54_RS04445 at 941.695 kb on + strand at 941.695 kb on + strand at 941.695 kb on + strand at 941.695 kb on + strand at 941.695 kb on + strand at 941.695 kb on + strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.696 kb on - strand at 941.719 kb on + strand at 941.720 kb on - strand at 942.088 kb on + strand, within LRK54_RS04450 at 942.088 kb on + strand, within LRK54_RS04450 at 942.089 kb on - strand, within LRK54_RS04450 at 942.089 kb on - strand, within LRK54_RS04450 at 942.089 kb on - strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.094 kb on + strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.095 kb on - strand, within LRK54_RS04450 at 942.742 kb on + strand, within LRK54_RS04450 at 942.743 kb on - strand, within LRK54_RS04450 at 942.743 kb on - strand, within LRK54_RS04450 at 942.743 kb on - strand, within LRK54_RS04450 at 942.743 kb on - strand, within LRK54_RS04450
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 20 mM remove 940,116 + LRK54_RS04440 0.38 +1.6 940,116 + LRK54_RS04440 0.38 +1.4 940,116 + LRK54_RS04440 0.38 +0.0 940,116 + LRK54_RS04440 0.38 -1.8 940,116 + LRK54_RS04440 0.38 -1.7 940,116 + LRK54_RS04440 0.38 +0.6 940,116 + LRK54_RS04440 0.38 -0.1 940,116 + LRK54_RS04440 0.38 +1.0 940,116 + LRK54_RS04440 0.38 -0.7 940,117 - LRK54_RS04440 0.38 -0.0 940,117 - LRK54_RS04440 0.38 -0.5 940,117 - LRK54_RS04440 0.38 +0.7 940,117 - LRK54_RS04440 0.38 -1.0 940,117 - LRK54_RS04440 0.38 +1.5 940,117 - LRK54_RS04440 0.38 +0.2 940,117 - LRK54_RS04440 0.38 -1.1 940,117 - LRK54_RS04440 0.38 -0.3 940,117 - LRK54_RS04440 0.38 +1.3 940,117 - LRK54_RS04440 0.38 -0.5 940,117 - LRK54_RS04440 0.38 +0.6 940,138 - LRK54_RS04440 0.40 -0.8 940,138 - LRK54_RS04440 0.40 +4.8 940,138 - LRK54_RS04440 0.40 -1.8 940,206 + LRK54_RS04440 0.45 +0.7 940,206 + LRK54_RS04440 0.45 +0.7 940,206 + LRK54_RS04440 0.45 +0.3 940,207 - LRK54_RS04440 0.45 -1.2 940,207 - LRK54_RS04440 0.45 +0.5 940,207 - LRK54_RS04440 0.45 -0.9 940,207 - LRK54_RS04440 0.45 +2.0 940,207 - LRK54_RS04440 0.45 -0.1 940,207 - LRK54_RS04440 0.45 +1.2 940,224 + LRK54_RS04440 0.46 +0.1 940,224 + LRK54_RS04440 0.46 -0.9 940,224 + LRK54_RS04440 0.46 -0.3 940,224 + LRK54_RS04440 0.46 -0.8 940,224 + LRK54_RS04440 0.46 -0.9 940,224 + LRK54_RS04440 0.46 -0.9 940,224 + LRK54_RS04440 0.46 -1.4 940,224 + LRK54_RS04440 0.46 -0.6 940,224 + LRK54_RS04440 0.46 -1.0 940,225 - LRK54_RS04440 0.46 -0.8 940,225 - LRK54_RS04440 0.46 +0.6 940,225 - LRK54_RS04440 0.46 +0.1 940,225 - LRK54_RS04440 0.46 -0.7 940,225 - LRK54_RS04440 0.46 -0.4 940,225 - LRK54_RS04440 0.46 +0.5 940,225 - LRK54_RS04440 0.46 +0.7 940,262 - LRK54_RS04440 0.49 +1.7 940,299 + LRK54_RS04440 0.52 -0.5 940,299 + LRK54_RS04440 0.52 -1.2 940,299 + LRK54_RS04440 0.52 +2.6 940,299 + LRK54_RS04440 0.52 -2.3 940,299 + LRK54_RS04440 0.52 -0.0 940,299 + LRK54_RS04440 0.52 -1.8 940,299 + LRK54_RS04440 0.52 -0.4 940,299 + LRK54_RS04440 0.52 -1.4 940,299 + LRK54_RS04440 0.52 -0.1 940,299 + LRK54_RS04440 0.52 -1.4 940,299 + LRK54_RS04440 0.52 -0.3 940,299 + LRK54_RS04440 0.52 -0.9 940,299 + LRK54_RS04440 0.52 +0.7 940,299 + LRK54_RS04440 0.52 +1.9 940,299 + LRK54_RS04440 0.52 -0.3 940,299 + LRK54_RS04440 0.52 -0.7 940,299 + LRK54_RS04440 0.52 -2.4 940,299 + LRK54_RS04440 0.52 -0.3 940,299 + LRK54_RS04440 0.52 +0.5 940,299 + LRK54_RS04440 0.52 -1.8 940,299 + LRK54_RS04440 0.52 -2.2 940,299 + LRK54_RS04440 0.52 -0.4 940,299 + LRK54_RS04440 0.52 -0.4 940,299 + LRK54_RS04440 0.52 +4.8 940,300 - LRK54_RS04440 0.52 +0.6 940,300 - LRK54_RS04440 0.52 -0.9 940,300 - LRK54_RS04440 0.52 +5.0 940,300 - LRK54_RS04440 0.52 -1.6 940,300 - LRK54_RS04440 0.52 -0.0 940,300 - LRK54_RS04440 0.52 -2.4 940,300 - LRK54_RS04440 0.52 -0.4 940,300 - LRK54_RS04440 0.52 -1.0 940,300 - LRK54_RS04440 0.52 -0.6 940,300 - LRK54_RS04440 0.52 -2.0 940,300 - LRK54_RS04440 0.52 -0.4 940,300 - LRK54_RS04440 0.52 -0.7 940,300 - LRK54_RS04440 0.52 +2.0 940,300 - LRK54_RS04440 0.52 +0.4 940,300 - LRK54_RS04440 0.52 -0.3 940,300 - LRK54_RS04440 0.52 -1.4 940,300 - LRK54_RS04440 0.52 +1.3 940,300 - LRK54_RS04440 0.52 +2.1 940,300 - LRK54_RS04440 0.52 +0.5 940,300 - LRK54_RS04440 0.52 -0.3 940,300 - LRK54_RS04440 0.52 -0.8 940,300 - LRK54_RS04440 0.52 -0.3 940,300 - LRK54_RS04440 0.52 -0.4 940,300 - LRK54_RS04440 0.52 -1.3 940,300 - LRK54_RS04440 0.52 +0.5 940,300 - LRK54_RS04440 0.52 +0.4 940,300 - LRK54_RS04440 0.52 -0.1 940,300 - LRK54_RS04440 0.52 +0.2 940,300 - LRK54_RS04440 0.52 -1.2 940,300 - LRK54_RS04440 0.52 -0.3 940,300 - LRK54_RS04440 0.52 +0.4 940,300 - LRK54_RS04440 0.52 -0.8 940,344 + LRK54_RS04440 0.55 -0.9 940,344 + LRK54_RS04440 0.55 +0.5 940,344 + LRK54_RS04440 0.55 -0.3 940,344 + LRK54_RS04440 0.55 +0.6 940,387 + LRK54_RS04440 0.59 +0.0 940,387 + LRK54_RS04440 0.59 +1.6 940,387 + LRK54_RS04440 0.59 -0.9 940,387 + LRK54_RS04440 0.59 -0.2 940,392 + LRK54_RS04440 0.59 -1.4 940,392 + LRK54_RS04440 0.59 -0.6 940,392 + LRK54_RS04440 0.59 +0.1 940,392 + LRK54_RS04440 0.59 -0.6 940,393 - LRK54_RS04440 0.59 +0.7 940,393 - LRK54_RS04440 0.59 -1.4 940,635 + LRK54_RS04440 0.77 +0.7 940,636 - LRK54_RS04440 0.77 -0.4 940,690 + LRK54_RS04440 0.82 -0.6 940,692 + LRK54_RS04440 0.82 -0.0 940,692 + LRK54_RS04440 0.82 +0.0 940,692 + LRK54_RS04440 0.82 -0.5 940,692 + LRK54_RS04440 0.82 -1.0 940,692 + LRK54_RS04440 0.82 +2.1 940,692 + LRK54_RS04440 0.82 -0.0 940,692 + LRK54_RS04440 0.82 -2.5 940,693 - LRK54_RS04440 0.82 +0.2 940,693 - LRK54_RS04440 0.82 -2.0 940,693 - LRK54_RS04440 0.82 +0.6 940,693 - LRK54_RS04440 0.82 -0.0 940,693 - LRK54_RS04440 0.82 -1.1 940,693 - LRK54_RS04440 0.82 +0.4 940,693 - LRK54_RS04440 0.82 -1.0 940,693 - LRK54_RS04440 0.82 -0.4 940,917 + +1.0 940,917 + -1.1 940,917 + +1.0 940,917 + +0.3 940,917 + -2.2 940,917 + +1.0 940,917 + +0.0 940,917 + -0.7 940,917 + +1.2 940,918 - +0.4 940,918 - -1.4 940,918 - -0.4 940,918 - +0.4 940,918 - -1.1 940,918 - -0.0 940,918 - -0.3 940,918 - -0.1 940,918 - -0.4 940,918 - +1.0 940,920 + +0.1 940,920 + -1.5 940,920 + +0.3 940,920 + -2.1 940,920 + -0.7 940,920 + +1.1 940,920 + +0.2 940,921 - -0.7 940,921 - +0.2 940,921 - -0.0 941,422 + LRK54_RS04445 0.54 +1.6 941,566 + LRK54_RS04445 0.74 +0.8 941,566 + LRK54_RS04445 0.74 +1.0 941,566 + LRK54_RS04445 0.74 +1.8 941,566 + LRK54_RS04445 0.74 -0.0 941,566 + LRK54_RS04445 0.74 +1.6 941,567 - LRK54_RS04445 0.74 +2.4 941,567 - LRK54_RS04445 0.74 -0.5 941,567 - LRK54_RS04445 0.74 -0.4 941,695 + +0.7 941,695 + +0.7 941,695 + +1.0 941,695 + -0.9 941,695 + +3.8 941,695 + +0.9 941,696 - +1.5 941,696 - +1.3 941,696 - -0.0 941,696 - +1.0 941,696 - +1.3 941,696 - +2.6 941,696 - -2.0 941,696 - +0.2 941,696 - +0.6 941,696 - +1.6 941,696 - +2.3 941,696 - +1.0 941,696 - +0.7 941,696 - +0.2 941,696 - +2.2 941,696 - +1.7 941,719 + +2.3 941,720 - +0.6 942,088 + LRK54_RS04450 0.13 +1.6 942,088 + LRK54_RS04450 0.13 +2.0 942,089 - LRK54_RS04450 0.13 +2.0 942,089 - LRK54_RS04450 0.13 +1.6 942,089 - LRK54_RS04450 0.13 +1.6 942,094 + LRK54_RS04450 0.13 +1.6 942,094 + LRK54_RS04450 0.13 +1.6 942,094 + LRK54_RS04450 0.13 +2.6 942,094 + LRK54_RS04450 0.13 +1.2 942,094 + LRK54_RS04450 0.13 +1.0 942,094 + LRK54_RS04450 0.13 +0.6 942,094 + LRK54_RS04450 0.13 +1.0 942,094 + LRK54_RS04450 0.13 +1.1 942,095 - LRK54_RS04450 0.13 +2.9 942,095 - LRK54_RS04450 0.13 +2.9 942,095 - LRK54_RS04450 0.13 +1.7 942,095 - LRK54_RS04450 0.13 +0.2 942,095 - LRK54_RS04450 0.13 +2.6 942,095 - LRK54_RS04450 0.13 +0.8 942,095 - LRK54_RS04450 0.13 +1.6 942,742 + LRK54_RS04450 0.64 +1.6 942,743 - LRK54_RS04450 0.64 +2.4 942,743 - LRK54_RS04450 0.64 +2.2 942,743 - LRK54_RS04450 0.64 +3.7 942,743 - LRK54_RS04450 0.64 +2.2
Or see this region's nucleotide sequence