Experiment: a-Cyclodextrin 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02250 and LRK54_RS02255 are separated by 222 nucleotides LRK54_RS02255 and LRK54_RS02260 are separated by 111 nucleotides LRK54_RS02260 and LRK54_RS02265 overlap by 4 nucleotides
LRK54_RS02250: LRK54_RS02250 - murein biosynthesis integral membrane protein MurJ, at 491,386 to 492,996
_RS02250
LRK54_RS02255: LRK54_RS02255 - 30S ribosomal protein S20, at 493,219 to 493,482
_RS02255
LRK54_RS02260: LRK54_RS02260 - hypothetical protein, at 493,594 to 493,896
_RS02260
LRK54_RS02265: LRK54_RS02265 - ferrous iron transporter B, at 493,893 to 495,728
_RS02265
Position (kb) 493
494 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.009 kb on + strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.076 kb on + strand at 493.077 kb on - strand at 493.086 kb on + strand at 493.086 kb on + strand at 493.086 kb on + strand at 493.086 kb on + strand at 493.087 kb on - strand at 493.087 kb on - strand at 493.087 kb on - strand at 493.480 kb on + strand at 493.480 kb on + strand at 493.480 kb on + strand at 493.481 kb on - strand at 493.481 kb on - strand at 493.481 kb on - strand at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.677 kb on + strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.678 kb on - strand, within LRK54_RS02260 at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.871 kb on + strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.872 kb on - strand at 493.918 kb on + strand at 493.918 kb on + strand at 493.918 kb on + strand at 493.918 kb on + strand at 493.918 kb on + strand at 493.918 kb on + strand at 493.919 kb on - strand at 493.919 kb on - strand at 493.919 kb on - strand at 493.919 kb on - strand at 493.919 kb on - strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.940 kb on - strand at 493.940 kb on - strand at 493.940 kb on - strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.957 kb on + strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.958 kb on - strand at 494.038 kb on + strand at 494.038 kb on + strand at 494.038 kb on + strand at 494.038 kb on + strand at 494.038 kb on + strand at 494.038 kb on + strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.079 kb on + strand, within LRK54_RS02265 at 494.079 kb on + strand, within LRK54_RS02265 at 494.079 kb on + strand, within LRK54_RS02265 at 494.080 kb on - strand, within LRK54_RS02265 at 494.080 kb on - strand, within LRK54_RS02265 at 494.131 kb on + strand, within LRK54_RS02265 at 494.131 kb on + strand, within LRK54_RS02265 at 494.131 kb on + strand, within LRK54_RS02265 at 494.131 kb on + strand, within LRK54_RS02265 at 494.132 kb on - strand, within LRK54_RS02265 at 494.132 kb on - strand, within LRK54_RS02265 at 494.132 kb on - strand, within LRK54_RS02265 at 494.132 kb on - strand, within LRK54_RS02265 at 494.132 kb on - strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.230 kb on + strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.231 kb on - strand, within LRK54_RS02265 at 494.251 kb on + strand, within LRK54_RS02265 at 494.251 kb on + strand, within LRK54_RS02265 at 494.251 kb on + strand, within LRK54_RS02265 at 494.251 kb on + strand, within LRK54_RS02265 at 494.251 kb on + strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.252 kb on - strand, within LRK54_RS02265 at 494.266 kb on + strand, within LRK54_RS02265 at 494.266 kb on + strand, within LRK54_RS02265 at 494.266 kb on + strand, within LRK54_RS02265 at 494.266 kb on + strand, within LRK54_RS02265 at 494.267 kb on - strand, within LRK54_RS02265 at 494.267 kb on - strand, within LRK54_RS02265 at 494.267 kb on - strand, within LRK54_RS02265 at 494.267 kb on - strand, within LRK54_RS02265 at 494.267 kb on - strand, within LRK54_RS02265 at 494.267 kb on - strand, within LRK54_RS02265 at 494.389 kb on + strand, within LRK54_RS02265 at 494.389 kb on + strand, within LRK54_RS02265 at 494.389 kb on + strand, within LRK54_RS02265 at 494.389 kb on + strand, within LRK54_RS02265 at 494.389 kb on + strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.390 kb on - strand, within LRK54_RS02265 at 494.428 kb on + strand, within LRK54_RS02265
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 20 mM remove 493,009 + -1.6 493,009 + -0.1 493,009 + -1.7 493,009 + -1.7 493,009 + -1.5 493,009 + -0.4 493,009 + +0.9 493,009 + -0.3 493,009 + +3.6 493,009 + +0.7 493,009 + -1.9 493,009 + -0.2 493,010 - +1.5 493,010 - +2.0 493,010 - +0.5 493,010 - -0.8 493,010 - +0.9 493,010 - +0.2 493,010 - +3.8 493,010 - +1.2 493,010 - -0.2 493,010 - -2.0 493,010 - +1.2 493,010 - +0.2 493,010 - -0.1 493,076 + -0.8 493,077 - -1.1 493,086 + -0.7 493,086 + -0.1 493,086 + -2.7 493,086 + +0.9 493,087 - -0.1 493,087 - +0.2 493,087 - +1.9 493,480 + +0.5 493,480 + +2.5 493,480 + +0.4 493,481 - +0.4 493,481 - -1.4 493,481 - +0.2 493,677 + LRK54_RS02260 0.27 +4.0 493,677 + LRK54_RS02260 0.27 +4.2 493,677 + LRK54_RS02260 0.27 +4.6 493,677 + LRK54_RS02260 0.27 +4.0 493,677 + LRK54_RS02260 0.27 +4.2 493,677 + LRK54_RS02260 0.27 +4.3 493,677 + LRK54_RS02260 0.27 +3.3 493,677 + LRK54_RS02260 0.27 +2.7 493,677 + LRK54_RS02260 0.27 +3.4 493,677 + LRK54_RS02260 0.27 +4.2 493,677 + LRK54_RS02260 0.27 +4.2 493,677 + LRK54_RS02260 0.27 +3.9 493,677 + LRK54_RS02260 0.27 +4.1 493,677 + LRK54_RS02260 0.27 +3.4 493,677 + LRK54_RS02260 0.27 +3.9 493,678 - LRK54_RS02260 0.28 +3.8 493,678 - LRK54_RS02260 0.28 +3.5 493,678 - LRK54_RS02260 0.28 +3.9 493,678 - LRK54_RS02260 0.28 +4.4 493,678 - LRK54_RS02260 0.28 +4.1 493,678 - LRK54_RS02260 0.28 +3.3 493,678 - LRK54_RS02260 0.28 +5.0 493,678 - LRK54_RS02260 0.28 +4.5 493,678 - LRK54_RS02260 0.28 +3.4 493,678 - LRK54_RS02260 0.28 +3.1 493,678 - LRK54_RS02260 0.28 +3.8 493,678 - LRK54_RS02260 0.28 +4.1 493,678 - LRK54_RS02260 0.28 +4.5 493,871 + +4.7 493,871 + +3.1 493,871 + +4.4 493,871 + +3.4 493,871 + +4.1 493,871 + +4.2 493,871 + +5.2 493,871 + +4.2 493,871 + +4.0 493,871 + +4.2 493,871 + +3.2 493,871 + +4.9 493,871 + +4.3 493,871 + +4.0 493,871 + +2.5 493,871 + +3.9 493,871 + +3.8 493,871 + +3.8 493,871 + +4.4 493,871 + +4.5 493,871 + +2.7 493,871 + +4.3 493,871 + +3.6 493,871 + +5.7 493,871 + +3.2 493,872 - +5.8 493,872 - +4.2 493,872 - +3.5 493,872 - +3.6 493,872 - +3.9 493,872 - +3.3 493,872 - +4.4 493,872 - +3.9 493,872 - +4.5 493,872 - +4.2 493,872 - +3.9 493,872 - +3.8 493,872 - +5.3 493,872 - +4.5 493,872 - +2.7 493,872 - +4.7 493,872 - +4.6 493,872 - +4.6 493,872 - +4.5 493,872 - +4.4 493,872 - +3.7 493,872 - +3.7 493,872 - +4.2 493,872 - +4.2 493,918 + +3.3 493,918 + +4.4 493,918 + +3.9 493,918 + +3.6 493,918 + +2.6 493,918 + +3.4 493,919 - +3.7 493,919 - +3.9 493,919 - +4.1 493,919 - +3.6 493,919 - +3.7 493,939 + +4.4 493,939 + +4.1 493,939 + +4.3 493,939 + +4.0 493,939 + +4.2 493,939 + +3.5 493,939 + +4.2 493,939 + +3.5 493,939 + +3.6 493,940 - +4.0 493,940 - +4.5 493,940 - +4.6 493,957 + +4.6 493,957 + +3.7 493,957 + +4.4 493,957 + +5.5 493,957 + +4.4 493,957 + +4.4 493,957 + +4.0 493,957 + +3.6 493,957 + +3.9 493,957 + +4.4 493,957 + +4.3 493,957 + +4.0 493,957 + +2.5 493,957 + +4.6 493,958 - +4.3 493,958 - +4.2 493,958 - +4.2 493,958 - +4.7 493,958 - +5.1 493,958 - +4.6 493,958 - +4.1 493,958 - +3.8 493,958 - +4.0 493,958 - +3.9 493,958 - +3.9 493,958 - +3.7 493,958 - +4.8 493,958 - +4.0 494,038 + +4.9 494,038 + +4.0 494,038 + +3.8 494,038 + +4.0 494,038 + +3.7 494,038 + +4.0 494,039 - +4.0 494,039 - +2.9 494,039 - +4.3 494,079 + LRK54_RS02265 0.10 +3.9 494,079 + LRK54_RS02265 0.10 +3.8 494,079 + LRK54_RS02265 0.10 +3.9 494,080 - LRK54_RS02265 0.10 +3.9 494,080 - LRK54_RS02265 0.10 +2.7 494,131 + LRK54_RS02265 0.13 +3.8 494,131 + LRK54_RS02265 0.13 +3.6 494,131 + LRK54_RS02265 0.13 +3.5 494,131 + LRK54_RS02265 0.13 +4.9 494,132 - LRK54_RS02265 0.13 +3.3 494,132 - LRK54_RS02265 0.13 +4.4 494,132 - LRK54_RS02265 0.13 +4.3 494,132 - LRK54_RS02265 0.13 +3.5 494,132 - LRK54_RS02265 0.13 +4.3 494,230 + LRK54_RS02265 0.18 +4.7 494,230 + LRK54_RS02265 0.18 +3.8 494,230 + LRK54_RS02265 0.18 +4.7 494,230 + LRK54_RS02265 0.18 +3.6 494,230 + LRK54_RS02265 0.18 +3.3 494,230 + LRK54_RS02265 0.18 +3.1 494,230 + LRK54_RS02265 0.18 +5.2 494,230 + LRK54_RS02265 0.18 +4.3 494,230 + LRK54_RS02265 0.18 +5.5 494,230 + LRK54_RS02265 0.18 +2.9 494,230 + LRK54_RS02265 0.18 +2.1 494,230 + LRK54_RS02265 0.18 +3.0 494,230 + LRK54_RS02265 0.18 +3.0 494,230 + LRK54_RS02265 0.18 +3.6 494,230 + LRK54_RS02265 0.18 +3.9 494,230 + LRK54_RS02265 0.18 +5.4 494,230 + LRK54_RS02265 0.18 +5.8 494,230 + LRK54_RS02265 0.18 +4.2 494,230 + LRK54_RS02265 0.18 +4.2 494,230 + LRK54_RS02265 0.18 +4.3 494,230 + LRK54_RS02265 0.18 +4.5 494,230 + LRK54_RS02265 0.18 +4.2 494,231 - LRK54_RS02265 0.18 +4.9 494,231 - LRK54_RS02265 0.18 +4.7 494,231 - LRK54_RS02265 0.18 +3.9 494,231 - LRK54_RS02265 0.18 +4.6 494,231 - LRK54_RS02265 0.18 +4.1 494,231 - LRK54_RS02265 0.18 +2.8 494,231 - LRK54_RS02265 0.18 +3.3 494,231 - LRK54_RS02265 0.18 +3.7 494,231 - LRK54_RS02265 0.18 +3.9 494,231 - LRK54_RS02265 0.18 +2.1 494,231 - LRK54_RS02265 0.18 +3.9 494,231 - LRK54_RS02265 0.18 +3.5 494,231 - LRK54_RS02265 0.18 +7.0 494,231 - LRK54_RS02265 0.18 +3.6 494,231 - LRK54_RS02265 0.18 +3.7 494,231 - LRK54_RS02265 0.18 +3.9 494,231 - LRK54_RS02265 0.18 +2.0 494,231 - LRK54_RS02265 0.18 +4.2 494,231 - LRK54_RS02265 0.18 +4.4 494,231 - LRK54_RS02265 0.18 +3.4 494,231 - LRK54_RS02265 0.18 +4.3 494,231 - LRK54_RS02265 0.18 +3.9 494,231 - LRK54_RS02265 0.18 +4.2 494,231 - LRK54_RS02265 0.18 +4.3 494,231 - LRK54_RS02265 0.18 +3.1 494,231 - LRK54_RS02265 0.18 +3.9 494,231 - LRK54_RS02265 0.18 +3.8 494,251 + LRK54_RS02265 0.19 +4.6 494,251 + LRK54_RS02265 0.19 +4.0 494,251 + LRK54_RS02265 0.19 +5.2 494,251 + LRK54_RS02265 0.19 +3.8 494,251 + LRK54_RS02265 0.19 +3.4 494,252 - LRK54_RS02265 0.20 +3.8 494,252 - LRK54_RS02265 0.20 +3.5 494,252 - LRK54_RS02265 0.20 +3.2 494,252 - LRK54_RS02265 0.20 +3.8 494,252 - LRK54_RS02265 0.20 +3.6 494,252 - LRK54_RS02265 0.20 +5.1 494,252 - LRK54_RS02265 0.20 +3.3 494,252 - LRK54_RS02265 0.20 +3.4 494,252 - LRK54_RS02265 0.20 +3.9 494,266 + LRK54_RS02265 0.20 +4.7 494,266 + LRK54_RS02265 0.20 +3.2 494,266 + LRK54_RS02265 0.20 +3.9 494,266 + LRK54_RS02265 0.20 +7.7 494,267 - LRK54_RS02265 0.20 +3.6 494,267 - LRK54_RS02265 0.20 +4.6 494,267 - LRK54_RS02265 0.20 +4.2 494,267 - LRK54_RS02265 0.20 +2.3 494,267 - LRK54_RS02265 0.20 +4.6 494,267 - LRK54_RS02265 0.20 +4.2 494,389 + LRK54_RS02265 0.27 +4.0 494,389 + LRK54_RS02265 0.27 +4.4 494,389 + LRK54_RS02265 0.27 +4.1 494,389 + LRK54_RS02265 0.27 +4.1 494,389 + LRK54_RS02265 0.27 +3.9 494,390 - LRK54_RS02265 0.27 +3.9 494,390 - LRK54_RS02265 0.27 +3.9 494,390 - LRK54_RS02265 0.27 +3.6 494,390 - LRK54_RS02265 0.27 +3.8 494,390 - LRK54_RS02265 0.27 +4.4 494,390 - LRK54_RS02265 0.27 +4.0 494,390 - LRK54_RS02265 0.27 +3.6 494,390 - LRK54_RS02265 0.27 +3.7 494,428 + LRK54_RS02265 0.29 +3.8
Or see this region's nucleotide sequence