Strain Fitness in Pantoea sp. MT58 around IAI47_20510

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20500 and IAI47_20505 are separated by 6 nucleotidesIAI47_20505 and IAI47_20510 are separated by 499 nucleotidesIAI47_20510 and IAI47_20515 are separated by 103 nucleotides IAI47_20500: IAI47_20500 - type II toxin-antitoxin system YhaV family toxin, at 349,541 to 350,011 _20500 IAI47_20505: IAI47_20505 - type II toxin-antitoxin system PrlF family antitoxin, at 350,018 to 350,362 _20505 IAI47_20510: IAI47_20510 - maltose operon protein MalM, at 350,862 to 351,800 _20510 IAI47_20515: IAI47_20515 - maltoporin, at 351,904 to 353,205 _20515 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 349.874 kb on - strand, within IAI47_20500at 349.874 kb on - strand, within IAI47_20500at 349.874 kb on - strand, within IAI47_20500at 349.905 kb on + strand, within IAI47_20500at 349.905 kb on + strand, within IAI47_20500at 349.910 kb on - strand, within IAI47_20500at 349.974 kb on + strandat 349.974 kb on + strandat 349.974 kb on + strandat 349.975 kb on - strandat 349.975 kb on - strandat 349.975 kb on - strandat 349.975 kb on - strandat 349.975 kb on - strandat 349.975 kb on - strandat 349.993 kb on + strandat 350.011 kb on + strandat 350.012 kb on - strandat 350.012 kb on - strandat 350.019 kb on + strandat 350.019 kb on + strandat 350.020 kb on - strandat 350.020 kb on - strandat 350.020 kb on - strandat 350.020 kb on - strandat 350.059 kb on + strand, within IAI47_20505at 350.059 kb on + strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.060 kb on - strand, within IAI47_20505at 350.078 kb on - strand, within IAI47_20505at 350.078 kb on - strand, within IAI47_20505at 350.078 kb on - strand, within IAI47_20505at 350.078 kb on - strand, within IAI47_20505at 350.088 kb on - strand, within IAI47_20505at 350.088 kb on - strand, within IAI47_20505at 350.090 kb on + strand, within IAI47_20505at 350.091 kb on - strand, within IAI47_20505at 350.091 kb on - strand, within IAI47_20505at 350.134 kb on + strand, within IAI47_20505at 350.135 kb on - strand, within IAI47_20505at 350.135 kb on - strand, within IAI47_20505at 350.135 kb on - strand, within IAI47_20505at 350.206 kb on + strand, within IAI47_20505at 350.207 kb on - strand, within IAI47_20505at 350.236 kb on - strand, within IAI47_20505at 350.236 kb on - strand, within IAI47_20505at 350.242 kb on + strand, within IAI47_20505at 350.323 kb on + strand, within IAI47_20505at 350.324 kb on - strand, within IAI47_20505at 350.324 kb on - strand, within IAI47_20505at 350.345 kb on - strandat 350.345 kb on - strandat 350.385 kb on + strandat 350.386 kb on - strandat 350.390 kb on + strandat 350.390 kb on + strandat 350.390 kb on + strandat 350.460 kb on - strandat 350.474 kb on - strandat 350.474 kb on - strandat 350.487 kb on + strandat 350.487 kb on + strandat 350.488 kb on - strandat 350.488 kb on - strandat 350.488 kb on - strandat 350.526 kb on + strandat 350.526 kb on + strandat 350.526 kb on + strandat 350.527 kb on - strandat 350.540 kb on + strandat 350.540 kb on + strandat 350.561 kb on + strandat 350.562 kb on - strandat 350.562 kb on - strandat 350.562 kb on - strandat 350.579 kb on + strandat 350.595 kb on - strandat 350.595 kb on - strandat 350.642 kb on - strandat 350.664 kb on + strandat 350.665 kb on - strandat 350.665 kb on - strandat 350.665 kb on - strandat 350.712 kb on + strandat 350.713 kb on - strandat 350.717 kb on + strandat 350.717 kb on + strandat 350.718 kb on - strandat 350.718 kb on - strandat 350.718 kb on - strandat 350.718 kb on - strandat 350.718 kb on - strandat 350.718 kb on - strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.719 kb on + strandat 350.720 kb on - strandat 350.720 kb on - strandat 350.720 kb on - strandat 350.720 kb on - strandat 350.720 kb on - strandat 350.720 kb on - strandat 350.733 kb on + strandat 350.733 kb on + strandat 350.734 kb on - strandat 350.752 kb on + strandat 350.753 kb on - strandat 350.764 kb on - strandat 350.764 kb on - strandat 350.846 kb on + strandat 350.883 kb on - strandat 350.883 kb on - strandat 350.888 kb on + strandat 350.889 kb on - strandat 350.889 kb on - strandat 350.889 kb on - strandat 350.993 kb on + strand, within IAI47_20510at 350.998 kb on + strand, within IAI47_20510at 350.998 kb on + strand, within IAI47_20510at 350.999 kb on - strand, within IAI47_20510at 350.999 kb on - strand, within IAI47_20510at 351.082 kb on + strand, within IAI47_20510at 351.101 kb on + strand, within IAI47_20510at 351.102 kb on - strand, within IAI47_20510at 351.234 kb on - strand, within IAI47_20510at 351.266 kb on - strand, within IAI47_20510at 351.266 kb on - strand, within IAI47_20510at 351.324 kb on + strand, within IAI47_20510at 351.324 kb on + strand, within IAI47_20510at 351.324 kb on + strand, within IAI47_20510at 351.325 kb on - strand, within IAI47_20510at 351.325 kb on - strand, within IAI47_20510at 351.557 kb on - strand, within IAI47_20510at 351.557 kb on - strand, within IAI47_20510at 351.557 kb on - strand, within IAI47_20510at 351.620 kb on + strand, within IAI47_20510at 351.621 kb on - strand, within IAI47_20510at 351.801 kb on + strandat 351.802 kb on - strandat 351.802 kb on - strandat 351.807 kb on + strandat 351.807 kb on + strandat 351.807 kb on + strandat 351.807 kb on + strandat 351.808 kb on - strandat 351.808 kb on - strandat 351.808 kb on - strandat 351.813 kb on - strandat 351.813 kb on - strandat 351.905 kb on + strandat 351.906 kb on - strandat 351.906 kb on - strandat 351.906 kb on - strandat 351.906 kb on - strandat 351.994 kb on - strandat 352.034 kb on + strandat 352.034 kb on + strandat 352.035 kb on - strand, within IAI47_20515at 352.139 kb on + strand, within IAI47_20515at 352.175 kb on - strand, within IAI47_20515at 352.175 kb on - strand, within IAI47_20515at 352.185 kb on - strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.227 kb on - strand, within IAI47_20515at 352.293 kb on - strand, within IAI47_20515at 352.293 kb on - strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.358 kb on + strand, within IAI47_20515at 352.374 kb on + strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.476 kb on + strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.529 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.657 kb on - strand, within IAI47_20515at 352.722 kb on + strand, within IAI47_20515at 352.770 kb on + strand, within IAI47_20515at 352.771 kb on - strand, within IAI47_20515at 352.778 kb on + strand, within IAI47_20515at 352.779 kb on - strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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349,874 - IAI47_20500 0.71 +0.5
349,874 - IAI47_20500 0.71 -1.6
349,874 - IAI47_20500 0.71 -0.0
349,905 + IAI47_20500 0.77 +1.2
349,905 + IAI47_20500 0.77 -1.2
349,910 - IAI47_20500 0.78 +0.6
349,974 + -0.4
349,974 + -2.1
349,974 + -1.9
349,975 - -1.8
349,975 - +1.6
349,975 - +0.7
349,975 - -2.5
349,975 - -0.8
349,975 - +0.4
349,993 + +1.1
350,011 + -1.9
350,012 - -1.0
350,012 - +0.6
350,019 + -1.4
350,019 + -0.0
350,020 - +1.1
350,020 - -2.3
350,020 - +0.6
350,020 - -1.1
350,059 + IAI47_20505 0.12 +0.8
350,059 + IAI47_20505 0.12 +0.9
350,060 - IAI47_20505 0.12 +1.0
350,060 - IAI47_20505 0.12 +0.5
350,060 - IAI47_20505 0.12 -1.3
350,060 - IAI47_20505 0.12 -0.1
350,060 - IAI47_20505 0.12 +0.1
350,060 - IAI47_20505 0.12 -1.5
350,060 - IAI47_20505 0.12 -1.5
350,060 - IAI47_20505 0.12 +1.1
350,060 - IAI47_20505 0.12 +0.6
350,060 - IAI47_20505 0.12 +0.6
350,060 - IAI47_20505 0.12 +0.5
350,060 - IAI47_20505 0.12 -2.4
350,060 - IAI47_20505 0.12 -1.8
350,078 - IAI47_20505 0.17 -0.8
350,078 - IAI47_20505 0.17 +0.6
350,078 - IAI47_20505 0.17 +0.1
350,078 - IAI47_20505 0.17 +1.2
350,088 - IAI47_20505 0.20 -3.3
350,088 - IAI47_20505 0.20 +1.0
350,090 + IAI47_20505 0.21 +1.4
350,091 - IAI47_20505 0.21 -0.6
350,091 - IAI47_20505 0.21 -0.0
350,134 + IAI47_20505 0.34 -2.7
350,135 - IAI47_20505 0.34 +0.4
350,135 - IAI47_20505 0.34 -1.9
350,135 - IAI47_20505 0.34 +0.4
350,206 + IAI47_20505 0.54 -0.1
350,207 - IAI47_20505 0.55 -0.8
350,236 - IAI47_20505 0.63 +2.3
350,236 - IAI47_20505 0.63 -0.8
350,242 + IAI47_20505 0.65 +1.8
350,323 + IAI47_20505 0.88 -0.0
350,324 - IAI47_20505 0.89 -1.4
350,324 - IAI47_20505 0.89 -1.4
350,345 - +1.8
350,345 - +1.1
350,385 + -1.8
350,386 - +1.6
350,390 + -1.6
350,390 + -1.0
350,390 + +1.4
350,460 - -1.8
350,474 - +0.1
350,474 - -3.1
350,487 + +0.6
350,487 + -0.1
350,488 - +2.0
350,488 - -0.1
350,488 - -0.2
350,526 + -3.0
350,526 + -0.4
350,526 + +0.8
350,527 - -0.4
350,540 + -1.0
350,540 + +1.2
350,561 + +0.9
350,562 - -0.4
350,562 - -2.8
350,562 - -2.4
350,579 + -0.8
350,595 - +2.4
350,595 - +1.9
350,642 - +3.3
350,664 + +0.3
350,665 - +0.9
350,665 - -1.8
350,665 - -0.4
350,712 + -2.1
350,713 - +0.0
350,717 + -2.4
350,717 + -0.0
350,718 - +0.6
350,718 - +1.2
350,718 - +0.4
350,718 - -0.1
350,718 - +1.1
350,718 - -1.6
350,719 + -0.0
350,719 + -2.6
350,719 + -0.8
350,719 + +0.3
350,719 + -0.4
350,719 + +0.6
350,719 + -0.3
350,719 + +1.6
350,719 + +2.3
350,719 + +0.0
350,719 + +0.0
350,719 + -2.5
350,720 - -0.0
350,720 - +1.2
350,720 - +0.5
350,720 - +1.7
350,720 - -2.3
350,720 - +0.4
350,733 + -0.4
350,733 + +0.5
350,734 - +0.6
350,752 + -2.3
350,753 - -2.4
350,764 - -1.0
350,764 - -1.1
350,846 + +0.8
350,883 - -1.9
350,883 - +1.8
350,888 + +2.2
350,889 - -0.0
350,889 - +1.6
350,889 - +2.0
350,993 + IAI47_20510 0.14 -0.4
350,998 + IAI47_20510 0.14 -0.3
350,998 + IAI47_20510 0.14 -2.0
350,999 - IAI47_20510 0.15 -0.6
350,999 - IAI47_20510 0.15 +1.6
351,082 + IAI47_20510 0.23 +0.2
351,101 + IAI47_20510 0.25 +3.8
351,102 - IAI47_20510 0.26 +0.9
351,234 - IAI47_20510 0.40 +1.1
351,266 - IAI47_20510 0.43 -0.7
351,266 - IAI47_20510 0.43 -1.6
351,324 + IAI47_20510 0.49 -0.4
351,324 + IAI47_20510 0.49 -1.2
351,324 + IAI47_20510 0.49 -1.0
351,325 - IAI47_20510 0.49 -0.9
351,325 - IAI47_20510 0.49 -1.4
351,557 - IAI47_20510 0.74 -0.7
351,557 - IAI47_20510 0.74 -0.9
351,557 - IAI47_20510 0.74 -1.4
351,620 + IAI47_20510 0.81 -1.5
351,621 - IAI47_20510 0.81 +0.4
351,801 + -1.4
351,802 - -0.2
351,802 - +0.8
351,807 + +1.2
351,807 + -2.6
351,807 + -0.1
351,807 + -2.1
351,808 - +2.9
351,808 - -1.0
351,808 - -2.7
351,813 - -0.8
351,813 - -1.2
351,905 + -1.0
351,906 - +0.6
351,906 - +0.1
351,906 - +0.0
351,906 - -1.0
351,994 - +0.6
352,034 + -0.4
352,034 + +2.4
352,035 - IAI47_20515 0.10 +0.6
352,139 + IAI47_20515 0.18 -3.4
352,175 - IAI47_20515 0.21 -0.4
352,175 - IAI47_20515 0.21 +0.6
352,185 - IAI47_20515 0.22 -2.0
352,226 + IAI47_20515 0.25 -1.6
352,226 + IAI47_20515 0.25 -1.5
352,226 + IAI47_20515 0.25 -1.9
352,226 + IAI47_20515 0.25 +1.6
352,227 - IAI47_20515 0.25 +0.3
352,293 - IAI47_20515 0.30 -2.8
352,293 - IAI47_20515 0.30 +0.6
352,304 + IAI47_20515 0.31 +1.4
352,304 + IAI47_20515 0.31 +0.6
352,304 + IAI47_20515 0.31 -0.3
352,304 + IAI47_20515 0.31 -1.6
352,304 + IAI47_20515 0.31 +2.1
352,304 + IAI47_20515 0.31 +0.7
352,304 + IAI47_20515 0.31 -0.3
352,304 + IAI47_20515 0.31 -0.4
352,304 + IAI47_20515 0.31 -0.8
352,305 - IAI47_20515 0.31 +0.6
352,305 - IAI47_20515 0.31 -0.4
352,305 - IAI47_20515 0.31 +0.3
352,305 - IAI47_20515 0.31 -1.0
352,305 - IAI47_20515 0.31 -0.4
352,305 - IAI47_20515 0.31 -0.2
352,358 + IAI47_20515 0.35 +1.4
352,374 + IAI47_20515 0.36 -0.1
352,375 - IAI47_20515 0.36 +0.7
352,375 - IAI47_20515 0.36 -1.9
352,434 - IAI47_20515 0.41 -1.4
352,434 - IAI47_20515 0.41 -0.8
352,434 - IAI47_20515 0.41 +2.0
352,454 + IAI47_20515 0.42 +0.8
352,454 + IAI47_20515 0.42 +0.2
352,455 - IAI47_20515 0.42 -2.2
352,455 - IAI47_20515 0.42 -3.0
352,476 + IAI47_20515 0.44 -1.2
352,477 - IAI47_20515 0.44 +3.1
352,477 - IAI47_20515 0.44 +0.2
352,477 - IAI47_20515 0.44 -1.8
352,529 + IAI47_20515 0.48 +1.8
352,556 + IAI47_20515 0.50 +2.3
352,556 + IAI47_20515 0.50 +0.6
352,557 - IAI47_20515 0.50 -2.0
352,557 - IAI47_20515 0.50 -0.8
352,657 - IAI47_20515 0.58 +0.4
352,722 + IAI47_20515 0.63 -1.8
352,770 + IAI47_20515 0.67 -0.8
352,771 - IAI47_20515 0.67 -2.1
352,778 + IAI47_20515 0.67 -0.8
352,779 - IAI47_20515 0.67 -0.4
352,781 + IAI47_20515 0.67 +0.6
352,781 + IAI47_20515 0.67 +2.0
352,781 + IAI47_20515 0.67 +0.8
352,782 - IAI47_20515 0.67 -0.3
352,782 - IAI47_20515 0.67 +1.6
352,782 - IAI47_20515 0.67 +0.8

Or see this region's nucleotide sequence