Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20465 and IAI47_20470 are separated by 109 nucleotides IAI47_20470 and IAI47_20475 are separated by 24 nucleotides
IAI47_20465: IAI47_20465 - Gfo/Idh/MocA family oxidoreductase, at 337,957 to 338,967
_20465
IAI47_20470: IAI47_20470 - OmpA family protein, at 339,077 to 339,550
_20470
IAI47_20475: IAI47_20475 - diguanylate cyclase, at 339,575 to 340,783
_20475
Position (kb) 339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 338.119 kb on + strand, within IAI47_20465 at 338.119 kb on + strand, within IAI47_20465 at 338.120 kb on - strand, within IAI47_20465 at 338.120 kb on - strand, within IAI47_20465 at 338.138 kb on + strand, within IAI47_20465 at 338.142 kb on + strand, within IAI47_20465 at 338.274 kb on + strand, within IAI47_20465 at 338.274 kb on + strand, within IAI47_20465 at 338.274 kb on + strand, within IAI47_20465 at 338.274 kb on + strand, within IAI47_20465 at 338.275 kb on - strand, within IAI47_20465 at 338.280 kb on + strand, within IAI47_20465 at 338.280 kb on + strand, within IAI47_20465 at 338.281 kb on - strand, within IAI47_20465 at 338.281 kb on - strand, within IAI47_20465 at 338.281 kb on - strand, within IAI47_20465 at 338.331 kb on + strand, within IAI47_20465 at 338.331 kb on + strand, within IAI47_20465 at 338.331 kb on + strand, within IAI47_20465 at 338.332 kb on - strand, within IAI47_20465 at 338.341 kb on + strand, within IAI47_20465 at 338.342 kb on - strand, within IAI47_20465 at 338.342 kb on - strand, within IAI47_20465 at 338.342 kb on - strand, within IAI47_20465 at 338.342 kb on - strand, within IAI47_20465 at 338.347 kb on - strand, within IAI47_20465 at 338.363 kb on + strand, within IAI47_20465 at 338.385 kb on + strand, within IAI47_20465 at 338.386 kb on - strand, within IAI47_20465 at 338.386 kb on - strand, within IAI47_20465 at 338.446 kb on + strand, within IAI47_20465 at 338.446 kb on + strand, within IAI47_20465 at 338.446 kb on + strand, within IAI47_20465 at 338.446 kb on + strand, within IAI47_20465 at 338.447 kb on - strand, within IAI47_20465 at 338.521 kb on + strand, within IAI47_20465 at 338.522 kb on - strand, within IAI47_20465 at 338.531 kb on + strand, within IAI47_20465 at 338.531 kb on + strand, within IAI47_20465 at 338.531 kb on + strand, within IAI47_20465 at 338.532 kb on - strand, within IAI47_20465 at 338.532 kb on - strand, within IAI47_20465 at 338.622 kb on + strand, within IAI47_20465 at 338.622 kb on + strand, within IAI47_20465 at 338.623 kb on - strand, within IAI47_20465 at 338.623 kb on - strand, within IAI47_20465 at 338.623 kb on - strand, within IAI47_20465 at 338.623 kb on - strand, within IAI47_20465 at 338.623 kb on - strand, within IAI47_20465 at 338.653 kb on + strand, within IAI47_20465 at 338.654 kb on - strand, within IAI47_20465 at 338.654 kb on - strand, within IAI47_20465 at 338.654 kb on - strand, within IAI47_20465 at 338.654 kb on - strand, within IAI47_20465 at 338.754 kb on + strand, within IAI47_20465 at 338.755 kb on - strand, within IAI47_20465 at 338.755 kb on - strand, within IAI47_20465 at 338.785 kb on - strand, within IAI47_20465 at 338.785 kb on - strand, within IAI47_20465 at 338.794 kb on + strand, within IAI47_20465 at 338.794 kb on + strand, within IAI47_20465 at 338.794 kb on + strand, within IAI47_20465 at 338.794 kb on + strand, within IAI47_20465 at 338.794 kb on + strand, within IAI47_20465 at 338.795 kb on - strand, within IAI47_20465 at 338.795 kb on - strand, within IAI47_20465 at 338.795 kb on - strand, within IAI47_20465 at 338.807 kb on + strand, within IAI47_20465 at 338.808 kb on - strand, within IAI47_20465 at 338.808 kb on - strand, within IAI47_20465 at 338.808 kb on - strand, within IAI47_20465 at 338.817 kb on + strand, within IAI47_20465 at 338.817 kb on + strand, within IAI47_20465 at 338.818 kb on - strand, within IAI47_20465 at 338.959 kb on + strand at 338.969 kb on - strand at 339.014 kb on + strand at 339.015 kb on - strand at 339.040 kb on - strand at 339.075 kb on + strand at 339.075 kb on + strand at 339.075 kb on + strand at 339.076 kb on - strand at 339.076 kb on - strand at 339.175 kb on + strand, within IAI47_20470 at 339.181 kb on + strand, within IAI47_20470 at 339.182 kb on - strand, within IAI47_20470 at 339.182 kb on - strand, within IAI47_20470 at 339.260 kb on - strand, within IAI47_20470 at 339.260 kb on - strand, within IAI47_20470 at 339.262 kb on - strand, within IAI47_20470 at 339.262 kb on - strand, within IAI47_20470 at 339.262 kb on - strand, within IAI47_20470 at 339.276 kb on + strand, within IAI47_20470 at 339.276 kb on + strand, within IAI47_20470 at 339.277 kb on - strand, within IAI47_20470 at 339.277 kb on - strand, within IAI47_20470 at 339.277 kb on - strand, within IAI47_20470 at 339.277 kb on - strand, within IAI47_20470 at 339.277 kb on - strand, within IAI47_20470 at 339.349 kb on + strand, within IAI47_20470 at 339.350 kb on - strand, within IAI47_20470 at 339.404 kb on - strand, within IAI47_20470 at 339.411 kb on - strand, within IAI47_20470 at 339.433 kb on + strand, within IAI47_20470 at 339.433 kb on + strand, within IAI47_20470 at 339.434 kb on - strand, within IAI47_20470 at 339.434 kb on - strand, within IAI47_20470 at 339.434 kb on - strand, within IAI47_20470 at 339.601 kb on + strand at 339.601 kb on + strand at 339.601 kb on + strand at 339.602 kb on - strand at 339.602 kb on - strand at 339.602 kb on - strand at 339.602 kb on - strand at 339.602 kb on - strand at 339.603 kb on + strand at 339.603 kb on + strand at 339.603 kb on + strand at 339.603 kb on + strand at 339.603 kb on + strand at 339.603 kb on + strand at 339.603 kb on + strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.604 kb on - strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.607 kb on + strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.608 kb on - strand at 339.613 kb on + strand at 339.643 kb on + strand at 339.643 kb on + strand at 339.644 kb on - strand at 339.644 kb on - strand at 339.709 kb on + strand, within IAI47_20475 at 339.710 kb on - strand, within IAI47_20475 at 339.793 kb on + strand, within IAI47_20475 at 339.793 kb on + strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.848 kb on + strand, within IAI47_20475 at 339.849 kb on - strand, within IAI47_20475 at 339.863 kb on + strand, within IAI47_20475 at 339.875 kb on + strand, within IAI47_20475 at 339.904 kb on + strand, within IAI47_20475 at 339.905 kb on - strand, within IAI47_20475 at 339.910 kb on + strand, within IAI47_20475 at 339.910 kb on + strand, within IAI47_20475 at 339.910 kb on + strand, within IAI47_20475 at 339.911 kb on - strand, within IAI47_20475 at 339.919 kb on + strand, within IAI47_20475 at 339.941 kb on + strand, within IAI47_20475 at 339.941 kb on + strand, within IAI47_20475 at 340.049 kb on - strand, within IAI47_20475 at 340.066 kb on + strand, within IAI47_20475 at 340.067 kb on - strand, within IAI47_20475 at 340.075 kb on + strand, within IAI47_20475 at 340.076 kb on - strand, within IAI47_20475 at 340.076 kb on - strand, within IAI47_20475 at 340.076 kb on - strand, within IAI47_20475 at 340.105 kb on + strand, within IAI47_20475 at 340.147 kb on + strand, within IAI47_20475 at 340.197 kb on + strand, within IAI47_20475 at 340.197 kb on + strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.213 kb on + strand, within IAI47_20475 at 340.273 kb on + strand, within IAI47_20475 at 340.300 kb on + strand, within IAI47_20475 at 340.300 kb on + strand, within IAI47_20475 at 340.300 kb on + strand, within IAI47_20475 at 340.309 kb on + strand, within IAI47_20475 at 340.310 kb on - strand, within IAI47_20475 at 340.310 kb on - strand, within IAI47_20475 at 340.310 kb on - strand, within IAI47_20475 at 340.331 kb on + strand, within IAI47_20475 at 340.331 kb on + strand, within IAI47_20475 at 340.394 kb on - strand, within IAI47_20475 at 340.394 kb on - strand, within IAI47_20475 at 340.415 kb on - strand, within IAI47_20475 at 340.416 kb on + strand, within IAI47_20475 at 340.416 kb on + strand, within IAI47_20475 at 340.416 kb on + strand, within IAI47_20475 at 340.417 kb on - strand, within IAI47_20475 at 340.443 kb on + strand, within IAI47_20475 at 340.443 kb on + strand, within IAI47_20475
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 338,119 + IAI47_20465 0.16 +0.6 338,119 + IAI47_20465 0.16 +0.1 338,120 - IAI47_20465 0.16 +1.6 338,120 - IAI47_20465 0.16 -0.6 338,138 + IAI47_20465 0.18 +1.8 338,142 + IAI47_20465 0.18 -0.4 338,274 + IAI47_20465 0.31 -2.2 338,274 + IAI47_20465 0.31 +1.4 338,274 + IAI47_20465 0.31 -1.0 338,274 + IAI47_20465 0.31 -0.2 338,275 - IAI47_20465 0.31 +0.8 338,280 + IAI47_20465 0.32 -0.8 338,280 + IAI47_20465 0.32 -0.4 338,281 - IAI47_20465 0.32 -1.8 338,281 - IAI47_20465 0.32 -1.8 338,281 - IAI47_20465 0.32 -2.3 338,331 + IAI47_20465 0.37 +1.1 338,331 + IAI47_20465 0.37 +1.2 338,331 + IAI47_20465 0.37 -0.3 338,332 - IAI47_20465 0.37 -0.4 338,341 + IAI47_20465 0.38 +3.0 338,342 - IAI47_20465 0.38 +1.4 338,342 - IAI47_20465 0.38 -0.2 338,342 - IAI47_20465 0.38 +0.3 338,342 - IAI47_20465 0.38 -0.8 338,347 - IAI47_20465 0.39 -2.1 338,363 + IAI47_20465 0.40 +1.9 338,385 + IAI47_20465 0.42 -1.9 338,386 - IAI47_20465 0.42 +1.6 338,386 - IAI47_20465 0.42 -2.4 338,446 + IAI47_20465 0.48 +1.2 338,446 + IAI47_20465 0.48 +1.7 338,446 + IAI47_20465 0.48 -1.4 338,446 + IAI47_20465 0.48 -0.1 338,447 - IAI47_20465 0.48 -0.0 338,521 + IAI47_20465 0.56 -3.0 338,522 - IAI47_20465 0.56 -0.8 338,531 + IAI47_20465 0.57 +0.9 338,531 + IAI47_20465 0.57 +0.1 338,531 + IAI47_20465 0.57 +1.4 338,532 - IAI47_20465 0.57 +2.3 338,532 - IAI47_20465 0.57 -3.1 338,622 + IAI47_20465 0.66 +0.3 338,622 + IAI47_20465 0.66 +0.2 338,623 - IAI47_20465 0.66 +0.2 338,623 - IAI47_20465 0.66 -0.4 338,623 - IAI47_20465 0.66 +0.1 338,623 - IAI47_20465 0.66 +0.9 338,623 - IAI47_20465 0.66 -2.3 338,653 + IAI47_20465 0.69 +0.4 338,654 - IAI47_20465 0.69 -0.7 338,654 - IAI47_20465 0.69 +1.0 338,654 - IAI47_20465 0.69 +0.8 338,654 - IAI47_20465 0.69 -0.3 338,754 + IAI47_20465 0.79 -1.6 338,755 - IAI47_20465 0.79 -1.2 338,755 - IAI47_20465 0.79 +0.5 338,785 - IAI47_20465 0.82 +0.3 338,785 - IAI47_20465 0.82 +1.4 338,794 + IAI47_20465 0.83 +0.8 338,794 + IAI47_20465 0.83 +2.0 338,794 + IAI47_20465 0.83 +0.1 338,794 + IAI47_20465 0.83 -1.6 338,794 + IAI47_20465 0.83 -1.8 338,795 - IAI47_20465 0.83 +2.0 338,795 - IAI47_20465 0.83 +1.8 338,795 - IAI47_20465 0.83 -2.8 338,807 + IAI47_20465 0.84 +1.9 338,808 - IAI47_20465 0.84 -0.8 338,808 - IAI47_20465 0.84 -0.9 338,808 - IAI47_20465 0.84 +0.3 338,817 + IAI47_20465 0.85 -2.0 338,817 + IAI47_20465 0.85 +1.3 338,818 - IAI47_20465 0.85 +1.3 338,959 + -1.0 338,969 - -1.0 339,014 + -1.6 339,015 - -0.2 339,040 - +0.2 339,075 + -1.9 339,075 + -0.6 339,075 + -0.4 339,076 - -0.4 339,076 - +1.6 339,175 + IAI47_20470 0.21 -0.1 339,181 + IAI47_20470 0.22 +0.6 339,182 - IAI47_20470 0.22 +1.3 339,182 - IAI47_20470 0.22 +1.6 339,260 - IAI47_20470 0.39 -1.6 339,260 - IAI47_20470 0.39 +2.0 339,262 - IAI47_20470 0.39 +0.8 339,262 - IAI47_20470 0.39 +1.9 339,262 - IAI47_20470 0.39 +1.1 339,276 + IAI47_20470 0.42 -2.9 339,276 + IAI47_20470 0.42 +1.7 339,277 - IAI47_20470 0.42 +1.6 339,277 - IAI47_20470 0.42 -0.4 339,277 - IAI47_20470 0.42 +1.5 339,277 - IAI47_20470 0.42 +0.9 339,277 - IAI47_20470 0.42 +2.6 339,349 + IAI47_20470 0.57 -0.8 339,350 - IAI47_20470 0.58 +1.0 339,404 - IAI47_20470 0.69 +0.2 339,411 - IAI47_20470 0.70 +1.2 339,433 + IAI47_20470 0.75 +1.6 339,433 + IAI47_20470 0.75 +2.9 339,434 - IAI47_20470 0.75 -2.1 339,434 - IAI47_20470 0.75 +2.3 339,434 - IAI47_20470 0.75 +0.2 339,601 + +0.9 339,601 + +0.6 339,601 + +2.3 339,602 - -1.2 339,602 - -0.8 339,602 - -1.2 339,602 - +0.7 339,602 - +1.3 339,603 + -1.2 339,603 + -1.0 339,603 + +0.6 339,603 + +0.3 339,603 + -2.3 339,603 + -1.2 339,603 + -1.8 339,604 - +0.2 339,604 - -1.2 339,604 - +0.9 339,604 - +0.1 339,604 - -1.6 339,604 - -0.2 339,604 - +0.2 339,604 - +0.7 339,607 + +1.1 339,607 + -2.2 339,607 + +3.6 339,607 + +0.3 339,607 + -0.0 339,607 + +0.7 339,607 + +1.0 339,607 + +1.3 339,607 + +1.3 339,607 + -2.0 339,608 - +0.7 339,608 - +2.3 339,608 - +1.2 339,608 - -2.8 339,608 - -2.5 339,608 - +0.6 339,608 - -1.4 339,608 - +1.0 339,608 - +0.9 339,608 - +1.0 339,613 + +2.0 339,643 + +1.3 339,643 + +0.6 339,644 - +0.8 339,644 - +1.1 339,709 + IAI47_20475 0.11 -0.9 339,710 - IAI47_20475 0.11 +1.3 339,793 + IAI47_20475 0.18 -0.6 339,793 + IAI47_20475 0.18 -1.6 339,794 - IAI47_20475 0.18 +1.3 339,794 - IAI47_20475 0.18 -1.8 339,794 - IAI47_20475 0.18 +0.7 339,794 - IAI47_20475 0.18 -0.4 339,848 + IAI47_20475 0.23 -0.2 339,849 - IAI47_20475 0.23 +2.6 339,863 + IAI47_20475 0.24 +1.4 339,875 + IAI47_20475 0.25 -0.8 339,904 + IAI47_20475 0.27 +1.6 339,905 - IAI47_20475 0.27 +1.3 339,910 + IAI47_20475 0.28 +1.8 339,910 + IAI47_20475 0.28 +1.3 339,910 + IAI47_20475 0.28 -2.6 339,911 - IAI47_20475 0.28 -0.9 339,919 + IAI47_20475 0.28 +1.6 339,941 + IAI47_20475 0.30 +1.3 339,941 + IAI47_20475 0.30 -1.4 340,049 - IAI47_20475 0.39 +0.6 340,066 + IAI47_20475 0.41 +1.6 340,067 - IAI47_20475 0.41 -1.6 340,075 + IAI47_20475 0.41 +1.3 340,076 - IAI47_20475 0.41 +0.5 340,076 - IAI47_20475 0.41 +1.8 340,076 - IAI47_20475 0.41 -1.4 340,105 + IAI47_20475 0.44 -1.0 340,147 + IAI47_20475 0.47 +2.1 340,197 + IAI47_20475 0.51 +2.4 340,197 + IAI47_20475 0.51 -0.7 340,198 - IAI47_20475 0.52 -1.2 340,198 - IAI47_20475 0.52 +0.6 340,198 - IAI47_20475 0.52 +1.6 340,198 - IAI47_20475 0.52 +0.1 340,198 - IAI47_20475 0.52 -0.0 340,198 - IAI47_20475 0.52 -2.5 340,198 - IAI47_20475 0.52 +0.5 340,213 + IAI47_20475 0.53 -0.0 340,273 + IAI47_20475 0.58 -0.0 340,300 + IAI47_20475 0.60 -1.4 340,300 + IAI47_20475 0.60 +0.6 340,300 + IAI47_20475 0.60 +0.6 340,309 + IAI47_20475 0.61 -0.1 340,310 - IAI47_20475 0.61 +2.6 340,310 - IAI47_20475 0.61 -0.4 340,310 - IAI47_20475 0.61 +1.8 340,331 + IAI47_20475 0.63 +0.9 340,331 + IAI47_20475 0.63 -0.9 340,394 - IAI47_20475 0.68 +0.6 340,394 - IAI47_20475 0.68 -0.4 340,415 - IAI47_20475 0.69 +1.8 340,416 + IAI47_20475 0.70 +1.6 340,416 + IAI47_20475 0.70 -1.4 340,416 + IAI47_20475 0.70 +1.9 340,417 - IAI47_20475 0.70 +2.1 340,443 + IAI47_20475 0.72 +0.2 340,443 + IAI47_20475 0.72 +1.6
Or see this region's nucleotide sequence