Strain Fitness in Pantoea sp. MT58 around IAI47_17830

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,786,363	+		IAI47_17820	0.46	-0.7
3,786,363	+		IAI47_17820	0.46	+2.2
3,786,363	+		IAI47_17820	0.46	-0.3
3,786,364	-		IAI47_17820	0.46	+0.5
3,786,364	-		IAI47_17820	0.46	+0.9
3,786,364	-		IAI47_17820	0.46	-1.9
3,786,364	-		IAI47_17820	0.46	-1.7
3,786,411	-		IAI47_17820	0.51	-1.5
3,786,437	+		IAI47_17820	0.53	-0.1
3,786,437	+		IAI47_17820	0.53	-0.3
3,786,437	+		IAI47_17820	0.53	-0.6
3,786,437	+		IAI47_17820	0.53	-2.0
3,786,438	-		IAI47_17820	0.53	+0.4
3,786,438	-		IAI47_17820	0.53	-0.6
3,786,438	-		IAI47_17820	0.53	-0.6
3,786,548	+		IAI47_17820	0.64	+0.6
3,786,714	-		IAI47_17820	0.79	-0.9
3,786,714	-		IAI47_17820	0.79	+0.9
3,786,809	+		IAI47_17820	0.88	-0.2
3,786,809	+		IAI47_17820	0.88	-2.3
3,786,809	+		IAI47_17820	0.88	-1.5
3,786,809	+		IAI47_17820	0.88	+0.8
3,786,809	+		IAI47_17820	0.88	-0.9
3,786,809	+		IAI47_17820	0.88	+1.9
3,786,810	-		IAI47_17820	0.88	+0.4
3,786,810	-		IAI47_17820	0.88	+0.6
3,786,810	-		IAI47_17820	0.88	-2.1
3,786,810	-		IAI47_17820	0.88	+1.8
3,786,810	-		IAI47_17820	0.88	-2.8
3,786,810	-		IAI47_17820	0.88	+2.2
3,786,810	-		IAI47_17820	0.88	+2.8
3,786,856	-				-0.7
3,786,856	-				-1.1
3,786,856	-				+1.2
3,786,856	-				-1.6
3,786,856	-				+0.5
3,786,856	-				+0.1
3,786,896	+				+2.2
3,786,908	+				-1.6
3,786,908	+				-1.9
3,786,909	-				+0.9
3,786,909	-				-1.6
3,786,981	-				-2.8
3,786,981	-				-0.3
3,787,032	+		IAI47_17825	0.13	+1.4
3,787,032	+		IAI47_17825	0.13	-0.0
3,787,032	+		IAI47_17825	0.13	-0.4
3,787,032	+		IAI47_17825	0.13	+0.6
3,787,033	-		IAI47_17825	0.14	+1.4
3,787,033	-		IAI47_17825	0.14	+1.2
3,787,035	+		IAI47_17825	0.14	-1.6
3,787,035	+		IAI47_17825	0.14	+1.2
3,787,035	+		IAI47_17825	0.14	-0.5
3,787,035	+		IAI47_17825	0.14	-0.2
3,787,036	-		IAI47_17825	0.15	-0.9
3,787,036	-		IAI47_17825	0.15	+1.7
3,787,036	-		IAI47_17825	0.15	+1.1
3,787,036	-		IAI47_17825	0.15	+2.3
3,787,036	-		IAI47_17825	0.15	-0.4
3,787,036	-		IAI47_17825	0.15	+0.4
3,787,036	-		IAI47_17825	0.15	-3.1
3,787,036	-		IAI47_17825	0.15	+2.3
3,787,120	+		IAI47_17825	0.40	-0.1
3,787,120	+		IAI47_17825	0.40	+1.8
3,787,121	-		IAI47_17825	0.41	+1.4
3,787,121	-		IAI47_17825	0.41	+0.4
3,787,136	+		IAI47_17825	0.45	+1.1
3,787,136	+		IAI47_17825	0.45	+0.2
3,787,136	+		IAI47_17825	0.45	+0.9
3,787,225	+		IAI47_17825	0.73	+1.2
3,787,287	+				-0.1
3,787,287	+				-0.1
3,787,287	+				-3.0
3,787,287	+				+1.9
3,787,287	+				-1.8
3,787,287	+				-0.2
3,787,288	-				+0.3
3,787,288	-				+3.7
3,787,288	-				-1.8
3,787,295	+				+1.1
3,787,296	-				-2.3
3,787,306	+				-0.6
3,787,306	+				+1.4
3,787,306	+				+0.6
3,787,307	-				+2.1
3,787,307	-				-1.6
3,787,310	-				-1.3
3,787,313	+				-1.6
3,787,313	+				+0.8
3,787,327	+				+0.2
3,787,327	+				+0.3
3,787,327	+				+0.9
3,787,327	+				-1.1
3,787,327	+				-0.0
3,787,327	+				-1.4
3,787,328	-				-1.6
3,787,332	+				-0.2
3,787,333	-				+2.8
3,787,333	-				-2.6
3,787,383	+		IAI47_17830	0.17	+1.1
3,787,383	+		IAI47_17830	0.17	+0.7
3,787,384	-		IAI47_17830	0.17	+0.4
3,787,384	-		IAI47_17830	0.17	+2.6
3,787,384	-		IAI47_17830	0.17	+2.6
3,787,430	-		IAI47_17830	0.28	-2.2
3,787,430	-		IAI47_17830	0.28	-0.9
3,787,444	+		IAI47_17830	0.31	-0.3
3,787,444	+		IAI47_17830	0.31	+0.9
3,787,445	-		IAI47_17830	0.32	+1.2
3,787,461	+		IAI47_17830	0.35	-2.1
3,787,473	+		IAI47_17830	0.38	+0.1
3,787,473	+		IAI47_17830	0.38	-0.2
3,787,474	-		IAI47_17830	0.39	+0.8
3,787,490	+		IAI47_17830	0.42	+0.2
3,787,490	+		IAI47_17830	0.42	-0.5
3,787,491	-		IAI47_17830	0.43	+0.5
3,787,491	-		IAI47_17830	0.43	-1.2
3,787,491	-		IAI47_17830	0.43	+1.9
3,787,491	-		IAI47_17830	0.43	+0.2
3,787,491	-		IAI47_17830	0.43	-1.0
3,787,491	-		IAI47_17830	0.43	-2.2
3,787,502	+		IAI47_17830	0.45	+2.4
3,787,502	+		IAI47_17830	0.45	+0.9
3,787,502	+		IAI47_17830	0.45	+0.9
3,787,503	-		IAI47_17830	0.45	+0.3
3,787,503	-		IAI47_17830	0.45	+2.6
3,787,503	-		IAI47_17830	0.45	+2.9
3,787,503	-		IAI47_17830	0.45	+0.4
3,787,503	-		IAI47_17830	0.45	-2.9
3,787,579	+		IAI47_17830	0.64	+0.8
3,787,579	+		IAI47_17830	0.64	-0.1
3,787,579	+		IAI47_17830	0.64	-1.9
3,787,580	-		IAI47_17830	0.64	-0.8
3,787,580	-		IAI47_17830	0.64	-0.4
3,787,599	+		IAI47_17830	0.68	-1.0
3,787,599	+		IAI47_17830	0.68	+0.3
3,787,599	+		IAI47_17830	0.68	-2.4
3,787,599	+		IAI47_17830	0.68	+0.1
3,787,599	+		IAI47_17830	0.68	+0.8
3,787,599	+		IAI47_17830	0.68	-0.5
3,787,599	+		IAI47_17830	0.68	+0.0
3,787,600	-		IAI47_17830	0.69	-0.9
3,787,600	-		IAI47_17830	0.69	-2.2
3,787,600	-		IAI47_17830	0.69	-0.6
3,787,600	-		IAI47_17830	0.69	-1.0
3,787,600	-		IAI47_17830	0.69	+1.7
3,787,606	+		IAI47_17830	0.70	-2.2
3,787,607	-		IAI47_17830	0.70	-2.8
3,787,607	-		IAI47_17830	0.70	-0.2
3,787,636	-		IAI47_17830	0.77	-1.8
3,787,711	-				+0.3
3,787,711	-				-2.4
3,787,711	-				+0.7
3,787,713	+				-1.5
3,787,713	+				+1.9
3,787,714	-				-2.6
3,787,714	-				-1.9
3,787,714	-				+5.7
3,787,714	-				-2.8
3,787,731	+				-0.9
3,787,731	+				+2.9
3,787,731	+				+0.0
3,787,731	+				+0.1
3,787,731	+				+0.4
3,787,731	+				+1.0
3,787,732	-				+0.4
3,787,732	-				-0.5
3,787,732	-				+0.9
3,787,732	-				-0.5
3,787,732	-				+1.0
3,787,732	-				+0.4
3,787,732	-				-0.3
3,787,732	-				+0.6
3,787,732	-				-0.8
3,787,736	+				-2.6
3,787,736	+				+0.7
3,787,736	+				+3.8
3,787,737	-				+0.4
3,787,737	-				-2.6
3,787,737	-				-0.6
3,787,737	-				-2.4
3,787,737	-				+1.3
3,787,760	+				+1.1
3,787,760	+				-0.6
3,787,760	+				+0.9
3,787,761	-				+0.0
3,787,761	-				-1.8
3,787,786	+				+0.1
3,787,833	-				+1.2
3,787,838	-				+0.1
3,787,854	+				-2.1
3,787,854	+				+1.7
3,787,854	+				+1.9
3,787,854	+				-1.7
3,787,854	+				+0.7
3,787,854	+				+0.8
3,787,854	+				+1.1
3,787,854	+				-0.6
3,787,854	+				-1.1
3,787,855	-				+0.1
3,787,855	-				-0.4
3,787,855	-				-2.6
3,787,855	-				+0.5
3,788,092	+				+0.4