Strain Fitness in Pantoea sp. MT58 around IAI47_16965

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,597,984	+		IAI47_16955	0.51	+0.5
3,598,067	-		IAI47_16955	0.67	-1.5
3,598,067	-		IAI47_16955	0.67	-1.1
3,598,334	-		IAI47_16960	0.21	-2.2
3,598,334	-		IAI47_16960	0.21	+0.3
3,598,334	-		IAI47_16960	0.21	+0.4
3,598,334	-		IAI47_16960	0.21	+1.2
3,598,348	+		IAI47_16960	0.23	-1.8
3,598,348	+		IAI47_16960	0.23	+1.2
3,598,349	-		IAI47_16960	0.23	+1.2
3,598,349	-		IAI47_16960	0.23	+1.7
3,598,349	-		IAI47_16960	0.23	-0.4
3,598,358	+		IAI47_16960	0.25	+0.6
3,598,358	+		IAI47_16960	0.25	-0.8
3,598,358	+		IAI47_16960	0.25	+2.5
3,598,358	+		IAI47_16960	0.25	-2.1
3,598,359	-		IAI47_16960	0.25	+1.0
3,598,359	-		IAI47_16960	0.25	+1.2
3,598,359	-		IAI47_16960	0.25	-1.8
3,598,426	+		IAI47_16960	0.38	-0.9
3,598,426	+		IAI47_16960	0.38	-0.1
3,598,426	+		IAI47_16960	0.38	-2.2
3,598,441	+		IAI47_16960	0.41	-0.4
3,598,441	+		IAI47_16960	0.41	+0.5
3,598,441	+		IAI47_16960	0.41	+0.4
3,598,441	+		IAI47_16960	0.41	-2.6
3,598,441	+		IAI47_16960	0.41	-0.8
3,598,441	+		IAI47_16960	0.41	+2.9
3,598,442	-		IAI47_16960	0.41	+2.3
3,598,442	-		IAI47_16960	0.41	+0.4
3,598,442	-		IAI47_16960	0.41	-2.6
3,598,442	-		IAI47_16960	0.41	-1.1
3,598,511	+		IAI47_16960	0.54	-1.4
3,598,601	+		IAI47_16960	0.71	+0.2
3,598,602	-		IAI47_16960	0.72	-0.1
3,598,640	+		IAI47_16960	0.79	-1.6
3,598,640	+		IAI47_16960	0.79	+1.9
3,598,640	+		IAI47_16960	0.79	+1.2
3,598,641	-		IAI47_16960	0.79	+0.1
3,598,737	-				+0.3
3,598,737	-				-2.1
3,598,745	+				-2.1
3,598,780	+				-1.0
3,598,780	+				+1.0
3,598,780	+				+0.3
3,598,780	+				-1.4
3,598,780	+				-0.9
3,598,780	+				-1.7
3,598,781	-				-1.3
3,598,781	-				+0.0
3,598,781	-				+0.9
3,598,781	-				+0.5
3,598,781	-				+2.2
3,598,781	-				-0.5
3,598,781	-				-0.9
3,598,782	+				-0.6
3,598,782	+				+2.9
3,598,783	-				-0.2
3,598,783	-				-2.4
3,598,783	-				-0.1
3,598,791	-				-1.9
3,598,862	-				-1.1
3,598,918	+				+0.9
3,598,918	+				+0.2
3,598,919	-				-1.0
3,598,919	-				+0.2
3,598,954	+				-2.2
3,598,954	+				-0.5
3,598,954	+				-0.4
3,598,954	+				+0.9
3,598,954	+				-3.1
3,598,954	+				+2.6
3,598,954	+				+2.7
3,598,954	+				-2.2
3,598,955	-				-0.3
3,598,955	-				-2.0
3,598,955	-				-1.9
3,598,955	-				+0.7
3,598,955	-				+0.2
3,598,955	-				+1.1
3,598,955	-				-1.8
3,598,955	-				+0.9
3,598,955	-				-0.1
3,598,955	-				-2.9
3,598,955	-				-0.8
3,598,955	-				+0.6
3,599,027	+				+0.9
3,599,027	+				+4.2
3,599,027	+				+3.4
3,599,027	+				+0.9
3,599,027	+				-0.7
3,599,027	+				-1.0
3,599,028	-				+0.6
3,599,028	-				-0.8
3,599,028	-				-1.9
3,599,028	-				-0.2
3,599,028	-				-1.9
3,599,028	-				+1.2
3,599,028	-				-1.3
3,599,028	-				+0.4
3,599,028	-				-0.4
3,599,086	+		IAI47_16965	0.13	+0.0
3,599,087	-		IAI47_16965	0.13	-0.4
3,599,111	+		IAI47_16965	0.16	-2.0
3,599,111	+		IAI47_16965	0.16	-2.7
3,599,149	+		IAI47_16965	0.19	-0.1
3,599,150	-		IAI47_16965	0.20	+2.4
3,599,150	-		IAI47_16965	0.20	-0.5
3,599,173	+		IAI47_16965	0.22	-2.4
3,599,174	-		IAI47_16965	0.22	-0.2
3,599,174	-		IAI47_16965	0.22	-3.7
3,599,203	-		IAI47_16965	0.25	+0.7
3,599,203	-		IAI47_16965	0.25	+1.9
3,599,258	+		IAI47_16965	0.30	+0.7
3,599,339	+		IAI47_16965	0.39	-1.5
3,599,464	+		IAI47_16965	0.51	-2.4
3,599,465	-		IAI47_16965	0.51	-0.0
3,599,484	-		IAI47_16965	0.53	-1.1
3,599,484	-		IAI47_16965	0.53	+0.4
3,599,484	-		IAI47_16965	0.53	+0.9
3,599,515	+		IAI47_16965	0.56	-0.2
3,599,515	+		IAI47_16965	0.56	-2.1
3,599,515	+		IAI47_16965	0.56	+0.1
3,599,516	-		IAI47_16965	0.56	-1.0
3,599,516	-		IAI47_16965	0.56	+2.5
3,599,612	+		IAI47_16965	0.66	-2.2
3,599,612	+		IAI47_16965	0.66	-2.0
3,599,646	+		IAI47_16965	0.69	-0.2
3,599,646	+		IAI47_16965	0.69	-1.7
3,599,647	-		IAI47_16965	0.69	+1.0
3,599,647	-		IAI47_16965	0.69	-1.8
3,599,647	-		IAI47_16965	0.69	-1.6
3,599,647	-		IAI47_16965	0.69	-0.2
3,599,647	-		IAI47_16965	0.69	-0.7
3,599,647	-		IAI47_16965	0.69	-0.6
3,599,647	-		IAI47_16965	0.69	+0.2
3,599,647	-		IAI47_16965	0.69	+0.2
3,599,650	+		IAI47_16965	0.70	-2.0
3,599,650	+		IAI47_16965	0.70	+1.8
3,599,650	+		IAI47_16965	0.70	-0.7
3,599,650	+		IAI47_16965	0.70	-0.7
3,599,650	+		IAI47_16965	0.70	+0.3
3,599,650	+		IAI47_16965	0.70	+0.2
3,599,650	+		IAI47_16965	0.70	-1.3
3,599,650	+		IAI47_16965	0.70	+0.9
3,599,650	+		IAI47_16965	0.70	-1.4
3,599,651	-		IAI47_16965	0.70	-1.6
3,599,651	-		IAI47_16965	0.70	+0.7
3,599,651	-		IAI47_16965	0.70	+2.2
3,599,651	-		IAI47_16965	0.70	-1.3
3,599,651	-		IAI47_16965	0.70	-0.4
3,599,651	-		IAI47_16965	0.70	+0.5
3,599,651	-		IAI47_16965	0.70	-1.3
3,599,660	+		IAI47_16965	0.71	+1.3
3,599,660	+		IAI47_16965	0.71	-1.9
3,599,661	-		IAI47_16965	0.71	+1.0
3,599,669	-		IAI47_16965	0.72	-1.5
3,599,681	+		IAI47_16965	0.73	+0.7
3,599,681	+		IAI47_16965	0.73	-0.0
3,599,682	-		IAI47_16965	0.73	-2.7
3,599,682	-		IAI47_16965	0.73	+0.9
3,599,792	+		IAI47_16965	0.84	-1.3
3,599,792	+		IAI47_16965	0.84	-0.9
3,599,793	-		IAI47_16965	0.84	-3.0
3,599,793	-		IAI47_16965	0.84	+0.3
3,599,930	+				+0.2
3,599,930	+				+0.6
3,599,930	+				+0.4
3,599,931	-				-0.7
3,599,931	-				-1.7
3,599,931	-				+1.0
3,599,948	+				+1.9
3,599,948	+				+1.7
3,599,948	+				-0.2
3,599,949	-				+0.1
3,599,949	-				+0.8
3,599,966	+				+1.1
3,599,966	+				+0.3
3,599,966	+				+0.3
3,599,966	+				+0.2
3,599,966	+				+0.5
3,599,966	+				+0.7
3,599,967	-				-0.3
3,599,967	-				-0.9
3,599,967	-				+0.0
3,599,967	-				+2.9
3,599,967	-				+1.7
3,599,967	-				+0.2
3,600,004	+				+0.2
3,600,021	-				+0.2
3,600,049	+		IAI47_16970	0.10	-1.0
3,600,049	+		IAI47_16970	0.10	-0.7
3,600,050	-		IAI47_16970	0.10	-1.7
3,600,050	-		IAI47_16970	0.10	+0.3
3,600,050	-		IAI47_16970	0.10	-1.0
3,600,050	-		IAI47_16970	0.10	+1.7
3,600,052	+		IAI47_16970	0.10	-0.4
3,600,052	+		IAI47_16970	0.10	-2.2
3,600,052	+		IAI47_16970	0.10	+0.8
3,600,052	+		IAI47_16970	0.10	+0.9
3,600,052	+		IAI47_16970	0.10	-0.9
3,600,052	+		IAI47_16970	0.10	-0.8
3,600,052	+		IAI47_16970	0.10	+1.9
3,600,052	+		IAI47_16970	0.10	-1.9
3,600,052	+		IAI47_16970	0.10	-3.3
3,600,052	+		IAI47_16970	0.10	+0.7
3,600,052	+		IAI47_16970	0.10	-0.3
3,600,052	+		IAI47_16970	0.10	+2.3
3,600,052	+		IAI47_16970	0.10	+2.0
3,600,052	+		IAI47_16970	0.10	+1.4
3,600,053	-		IAI47_16970	0.11	-2.4
3,600,053	-		IAI47_16970	0.11	+0.6
3,600,053	-		IAI47_16970	0.11	+0.5
3,600,053	-		IAI47_16970	0.11	+0.0
3,600,053	-		IAI47_16970	0.11	-3.4
3,600,053	-		IAI47_16970	0.11	-2.3
3,600,053	-		IAI47_16970	0.11	-1.9
3,600,053	-		IAI47_16970	0.11	-3.0
3,600,053	-		IAI47_16970	0.11	-0.7
3,600,053	-		IAI47_16970	0.11	-0.0
3,600,053	-		IAI47_16970	0.11	+0.1
3,600,053	-		IAI47_16970	0.11	-0.6
3,600,056	+		IAI47_16970	0.11	+0.1
3,600,056	+		IAI47_16970	0.11	-1.3
3,600,056	+		IAI47_16970	0.11	+0.6
3,600,056	+		IAI47_16970	0.11	+1.9
3,600,057	-		IAI47_16970	0.11	-1.8
3,600,057	-		IAI47_16970	0.11	+0.9
3,600,057	-		IAI47_16970	0.11	-2.4
3,600,057	-		IAI47_16970	0.11	-0.0
3,600,057	-		IAI47_16970	0.11	-2.6
3,600,057	-		IAI47_16970	0.11	+1.4
3,600,057	-		IAI47_16970	0.11	-2.1
3,600,057	-		IAI47_16970	0.11	+0.6
3,600,057	-		IAI47_16970	0.11	-0.5
3,600,057	-		IAI47_16970	0.11	+0.2
3,600,057	-		IAI47_16970	0.11	-0.2
3,600,080	-		IAI47_16970	0.14	-1.2
3,600,080	-		IAI47_16970	0.14	-1.8
3,600,098	+		IAI47_16970	0.16	-0.8
3,600,098	+		IAI47_16970	0.16	-2.8
3,600,209	+		IAI47_16970	0.28	-0.2
3,600,209	+		IAI47_16970	0.28	+1.1
3,600,209	+		IAI47_16970	0.28	-0.6
3,600,210	-		IAI47_16970	0.28	+0.2
3,600,241	+		IAI47_16970	0.32	+0.3
3,600,241	+		IAI47_16970	0.32	-2.3
3,600,241	+		IAI47_16970	0.32	+0.3
3,600,241	+		IAI47_16970	0.32	-0.9
3,600,241	+		IAI47_16970	0.32	+0.5
3,600,241	+		IAI47_16970	0.32	-0.8
3,600,242	-		IAI47_16970	0.32	+0.5
3,600,242	-		IAI47_16970	0.32	+0.6
3,600,242	-		IAI47_16970	0.32	+2.5
3,600,242	-		IAI47_16970	0.32	+2.4
3,600,242	-		IAI47_16970	0.32	-2.2
3,600,242	-		IAI47_16970	0.32	+1.6
3,600,247	+		IAI47_16970	0.33	-0.6
3,600,248	-		IAI47_16970	0.33	+0.3
3,600,314	+		IAI47_16970	0.40	+0.3
3,600,314	+		IAI47_16970	0.40	-1.7
3,600,314	+		IAI47_16970	0.40	-0.1
3,600,314	+		IAI47_16970	0.40	-3.6
3,600,314	+		IAI47_16970	0.40	-0.9
3,600,314	+		IAI47_16970	0.40	-1.4
3,600,314	+		IAI47_16970	0.40	-2.2
3,600,315	-		IAI47_16970	0.40	+0.5
3,600,315	-		IAI47_16970	0.40	+0.9
3,600,315	-		IAI47_16970	0.40	-2.0
3,600,315	-		IAI47_16970	0.40	+2.1
3,600,315	-		IAI47_16970	0.40	-2.8
3,600,315	-		IAI47_16970	0.40	-0.4
3,600,316	+		IAI47_16970	0.41	+0.9
3,600,330	+		IAI47_16970	0.42	+0.3
3,600,331	-		IAI47_16970	0.42	+1.1
3,600,331	-		IAI47_16970	0.42	+0.7
3,600,331	-		IAI47_16970	0.42	-0.4
3,600,331	-		IAI47_16970	0.42	-0.7
3,600,331	-		IAI47_16970	0.42	+0.9
3,600,331	-		IAI47_16970	0.42	-0.7
3,600,367	+		IAI47_16970	0.46	+3.4
3,600,367	+		IAI47_16970	0.46	-0.4
3,600,367	+		IAI47_16970	0.46	+0.8
3,600,367	+		IAI47_16970	0.46	+0.5
3,600,367	+		IAI47_16970	0.46	-0.7
3,600,367	+		IAI47_16970	0.46	-0.6
3,600,368	-		IAI47_16970	0.46	+0.6
3,600,368	-		IAI47_16970	0.46	-0.3
3,600,368	-		IAI47_16970	0.46	-2.3
3,600,368	-		IAI47_16970	0.46	+0.7
3,600,368	-		IAI47_16970	0.46	+2.2
3,600,399	+		IAI47_16970	0.50	+2.1
3,600,399	+		IAI47_16970	0.50	+1.3
3,600,399	+		IAI47_16970	0.50	-0.7
3,600,399	+		IAI47_16970	0.50	-1.9
3,600,400	-		IAI47_16970	0.50	-1.8
3,600,400	-		IAI47_16970	0.50	-1.6
3,600,400	-		IAI47_16970	0.50	+0.6
3,600,400	-		IAI47_16970	0.50	+1.5
3,600,400	-		IAI47_16970	0.50	-0.7
3,600,400	-		IAI47_16970	0.50	-1.7
3,600,431	-		IAI47_16970	0.54	-1.0
3,600,464	+		IAI47_16970	0.57	+0.7
3,600,464	+		IAI47_16970	0.57	-3.7
3,600,465	-		IAI47_16970	0.57	-0.6
3,600,557	+		IAI47_16970	0.68	-1.0
3,600,557	+		IAI47_16970	0.68	-0.6
3,600,557	+		IAI47_16970	0.68	+0.4
3,600,557	+		IAI47_16970	0.68	+2.0
3,600,557	+		IAI47_16970	0.68	-4.0
3,600,557	+		IAI47_16970	0.68	-1.4
3,600,557	+		IAI47_16970	0.68	-0.6
3,600,557	+		IAI47_16970	0.68	+2.6
3,600,558	-		IAI47_16970	0.68	-0.9
3,600,558	-		IAI47_16970	0.68	+1.2
3,600,578	-		IAI47_16970	0.70	-0.1
3,600,578	-		IAI47_16970	0.70	+1.7
3,600,636	-		IAI47_16970	0.77	+0.3
3,600,641	+		IAI47_16970	0.77	+1.9
3,600,641	+		IAI47_16970	0.77	+0.7
3,600,641	+		IAI47_16970	0.77	-0.6
3,600,641	+		IAI47_16970	0.77	-1.8
3,600,641	+		IAI47_16970	0.77	+3.1
3,600,641	+		IAI47_16970	0.77	-1.0
3,600,642	-		IAI47_16970	0.78	+0.3
3,600,642	-		IAI47_16970	0.78	+0.8
3,600,642	-		IAI47_16970	0.78	-3.0
3,600,642	-		IAI47_16970	0.78	-1.6
3,600,643	+		IAI47_16970	0.78	+0.2
3,600,643	+		IAI47_16970	0.78	-0.0
3,600,643	+		IAI47_16970	0.78	-0.4
3,600,644	-		IAI47_16970	0.78	-1.1
3,600,644	-		IAI47_16970	0.78	+0.1
3,600,644	-		IAI47_16970	0.78	+1.3
3,600,644	-		IAI47_16970	0.78	+2.4
3,600,644	-		IAI47_16970	0.78	-1.5
3,600,644	-		IAI47_16970	0.78	-0.4
3,600,644	-		IAI47_16970	0.78	+1.3
3,600,644	-		IAI47_16970	0.78	-0.2
3,600,644	-		IAI47_16970	0.78	-0.2
3,600,644	-		IAI47_16970	0.78	+0.7
3,600,794	-				+0.0
3,600,840	+				-0.4
3,600,841	-				-1.1
3,600,850	+				+1.4
3,600,850	+				-1.6
3,600,850	+				+1.6
3,600,851	-				-0.7
3,600,858	-				+1.1
3,600,859	+				-1.9
3,600,859	+				+0.3
3,600,859	+				-1.7
3,600,859	+				-2.6
3,600,860	-				+1.0
3,600,860	-				-0.1
3,600,883	+				+2.6
3,600,902	+				-0.2
3,600,902	+				-1.1
3,600,903	-				+1.1
3,600,903	-				+0.7
3,600,905	+				-1.3
3,600,905	+				+0.8
3,600,905	+				+0.3
3,600,906	-				-0.1
3,600,906	-				+0.8
3,600,910	-				+3.0
3,600,910	-				+0.7
3,600,910	-				-0.2
3,600,910	-				-1.7
3,600,910	-				+0.3
3,600,910	-				-0.5
3,600,929	+				-2.1
3,600,930	-				+0.1
3,600,930	-				+1.2
3,600,930	-				-1.6