Strain Fitness in Pantoea sp. MT58 around IAI47_15720

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,313,132	+				-2.7
3,313,141	-				+3.2
3,313,164	+				+2.2
3,313,164	+				+1.1
3,313,164	+				-0.2
3,313,164	+				-2.5
3,313,164	+				-2.0
3,313,165	-				-0.5
3,313,178	-				+0.7
3,313,208	+				+2.5
3,313,208	+				-2.8
3,313,208	+				-1.1
3,313,208	+				+0.5
3,313,208	+				+1.2
3,313,209	-				+1.7
3,313,209	-				+0.7
3,313,209	-				+0.0
3,313,209	-				-2.0
3,313,209	-				+2.7
3,313,213	+				+0.8
3,313,250	+		IAI47_15715	0.13	-0.2
3,313,250	+		IAI47_15715	0.13	-0.0
3,313,250	+		IAI47_15715	0.13	-2.0
3,313,250	+		IAI47_15715	0.13	+1.0
3,313,250	+		IAI47_15715	0.13	+0.3
3,313,251	-		IAI47_15715	0.13	-0.3
3,313,251	-		IAI47_15715	0.13	-0.5
3,313,251	-		IAI47_15715	0.13	+2.3
3,313,251	-		IAI47_15715	0.13	+1.4
3,313,251	-		IAI47_15715	0.13	-2.2
3,313,260	-		IAI47_15715	0.14	+0.1
3,313,274	+		IAI47_15715	0.16	+0.2
3,313,274	+		IAI47_15715	0.16	-1.8
3,313,274	+		IAI47_15715	0.16	+0.7
3,313,274	+		IAI47_15715	0.16	-0.6
3,313,274	+		IAI47_15715	0.16	-0.8
3,313,274	+		IAI47_15715	0.16	-1.5
3,313,275	-		IAI47_15715	0.16	+0.6
3,313,275	-		IAI47_15715	0.16	-1.9
3,313,275	-		IAI47_15715	0.16	-2.5
3,313,275	-		IAI47_15715	0.16	-0.4
3,313,275	-		IAI47_15715	0.16	-0.5
3,313,275	-		IAI47_15715	0.16	+2.3
3,313,275	-		IAI47_15715	0.16	+0.9
3,313,275	-		IAI47_15715	0.16	-2.6
3,313,276	+		IAI47_15715	0.16	+1.4
3,313,276	+		IAI47_15715	0.16	+1.8
3,313,276	+		IAI47_15715	0.16	+1.0
3,313,276	+		IAI47_15715	0.16	-0.5
3,313,276	+		IAI47_15715	0.16	+0.1
3,313,276	+		IAI47_15715	0.16	-0.7
3,313,276	+		IAI47_15715	0.16	-0.4
3,313,277	-		IAI47_15715	0.16	+2.4
3,313,277	-		IAI47_15715	0.16	-0.9
3,313,277	-		IAI47_15715	0.16	+0.4
3,313,277	-		IAI47_15715	0.16	-0.8
3,313,277	-		IAI47_15715	0.16	-1.5
3,313,277	-		IAI47_15715	0.16	+1.6
3,313,277	-		IAI47_15715	0.16	-1.9
3,313,277	-		IAI47_15715	0.16	+2.4
3,313,322	-		IAI47_15715	0.21	-0.5
3,313,331	-		IAI47_15715	0.23	-1.7
3,313,358	+		IAI47_15715	0.26	-0.7
3,313,358	+		IAI47_15715	0.26	+1.7
3,313,359	-		IAI47_15715	0.26	+0.6
3,313,418	+		IAI47_15715	0.33	+0.9
3,313,420	+		IAI47_15715	0.34	+1.4
3,313,421	-		IAI47_15715	0.34	+0.5
3,313,421	-		IAI47_15715	0.34	+1.0
3,313,421	-		IAI47_15715	0.34	+0.6
3,313,421	-		IAI47_15715	0.34	+0.2
3,313,427	-		IAI47_15715	0.34	-1.9
3,313,427	-		IAI47_15715	0.34	-1.6
3,313,462	-		IAI47_15715	0.39	-0.6
3,313,486	+		IAI47_15715	0.42	+1.8
3,313,486	+		IAI47_15715	0.42	+0.9
3,313,486	+		IAI47_15715	0.42	-2.0
3,313,486	+		IAI47_15715	0.42	+0.4
3,313,486	+		IAI47_15715	0.42	-0.5
3,313,487	-		IAI47_15715	0.42	-1.1
3,313,487	-		IAI47_15715	0.42	+0.7
3,313,487	-		IAI47_15715	0.42	-1.4
3,313,487	-		IAI47_15715	0.42	-0.2
3,313,498	+		IAI47_15715	0.43	+0.4
3,313,498	+		IAI47_15715	0.43	-0.5
3,313,498	+		IAI47_15715	0.43	-0.1
3,313,498	+		IAI47_15715	0.43	-1.7
3,313,498	+		IAI47_15715	0.43	-1.0
3,313,498	+		IAI47_15715	0.43	+0.4
3,313,498	+		IAI47_15715	0.43	-0.1
3,313,498	+		IAI47_15715	0.43	+1.1
3,313,498	+		IAI47_15715	0.43	+1.2
3,313,498	+		IAI47_15715	0.43	-0.7
3,313,498	+		IAI47_15715	0.43	-1.0
3,313,498	+		IAI47_15715	0.43	+1.2
3,313,498	+		IAI47_15715	0.43	-0.0
3,313,498	+		IAI47_15715	0.43	+1.3
3,313,498	+		IAI47_15715	0.43	-0.5
3,313,498	+		IAI47_15715	0.43	+0.9
3,313,499	-		IAI47_15715	0.43	+1.4
3,313,499	-		IAI47_15715	0.43	-0.6
3,313,499	-		IAI47_15715	0.43	-0.1
3,313,499	-		IAI47_15715	0.43	+1.2
3,313,499	-		IAI47_15715	0.43	+1.4
3,313,499	-		IAI47_15715	0.43	-1.3
3,313,499	-		IAI47_15715	0.43	+0.3
3,313,499	-		IAI47_15715	0.43	-0.2
3,313,499	-		IAI47_15715	0.43	+2.4
3,313,499	-		IAI47_15715	0.43	-1.7
3,313,499	-		IAI47_15715	0.43	+0.1
3,313,499	-		IAI47_15715	0.43	+1.9
3,313,499	-		IAI47_15715	0.43	-1.0
3,313,499	-		IAI47_15715	0.43	+0.1
3,313,502	+		IAI47_15715	0.44	+1.6
3,313,503	-		IAI47_15715	0.44	+2.0
3,313,598	+		IAI47_15715	0.56	+1.4
3,313,598	+		IAI47_15715	0.56	-1.9
3,313,599	-		IAI47_15715	0.56	+2.3
3,313,599	-		IAI47_15715	0.56	+0.8
3,313,599	-		IAI47_15715	0.56	+1.9
3,313,599	-		IAI47_15715	0.56	-1.1
3,313,599	-		IAI47_15715	0.56	+0.1
3,313,599	-		IAI47_15715	0.56	+0.2
3,313,658	-		IAI47_15715	0.63	-0.9
3,313,733	-		IAI47_15715	0.72	-0.0
3,313,745	+		IAI47_15715	0.74	-2.2
3,313,745	+		IAI47_15715	0.74	+1.2
3,313,745	+		IAI47_15715	0.74	+0.5
3,313,745	+		IAI47_15715	0.74	-0.0
3,313,745	+		IAI47_15715	0.74	-2.3
3,313,745	+		IAI47_15715	0.74	-1.0
3,313,745	+		IAI47_15715	0.74	-2.6
3,313,745	+		IAI47_15715	0.74	+1.3
3,313,745	+		IAI47_15715	0.74	-1.7
3,313,746	-		IAI47_15715	0.74	-2.5
3,313,746	-		IAI47_15715	0.74	+1.0
3,313,746	-		IAI47_15715	0.74	-0.8
3,313,746	-		IAI47_15715	0.74	-0.1
3,313,746	-		IAI47_15715	0.74	+1.1
3,313,746	-		IAI47_15715	0.74	+0.0
3,313,746	-		IAI47_15715	0.74	-1.7
3,313,746	-		IAI47_15715	0.74	+1.8
3,313,746	-		IAI47_15715	0.74	+0.2
3,313,746	-		IAI47_15715	0.74	+2.4
3,313,746	-		IAI47_15715	0.74	-0.6
3,313,746	-		IAI47_15715	0.74	+1.4
3,313,746	-		IAI47_15715	0.74	+0.7
3,313,769	+		IAI47_15715	0.77	-2.9
3,313,769	+		IAI47_15715	0.77	-0.1
3,313,770	-		IAI47_15715	0.77	+1.1
3,313,826	+		IAI47_15715	0.84	+0.3
3,313,826	+		IAI47_15715	0.84	+0.8
3,313,826	+		IAI47_15715	0.84	+1.1
3,313,827	-		IAI47_15715	0.84	-0.6
3,313,827	-		IAI47_15715	0.84	+0.6
3,313,827	-		IAI47_15715	0.84	-0.7
3,313,834	+		IAI47_15715	0.85	-0.3
3,313,870	+		IAI47_15715	0.89	+2.1
3,313,870	+		IAI47_15715	0.89	+2.7
3,313,870	+		IAI47_15715	0.89	+1.2
3,313,870	+		IAI47_15715	0.89	-0.7
3,313,870	+		IAI47_15715	0.89	+5.0
3,313,870	+		IAI47_15715	0.89	+1.2
3,313,871	-		IAI47_15715	0.89	-2.5
3,313,871	-		IAI47_15715	0.89	-1.3
3,313,871	-		IAI47_15715	0.89	-2.5
3,313,871	-		IAI47_15715	0.89	+0.9
3,313,871	-		IAI47_15715	0.89	+0.9
3,313,871	-		IAI47_15715	0.89	-0.4
3,313,871	-		IAI47_15715	0.89	-0.3
3,313,871	-		IAI47_15715	0.89	-1.5
3,313,876	+		IAI47_15715	0.90	+1.2
3,313,876	+		IAI47_15715	0.90	-0.9
3,313,876	+		IAI47_15715	0.90	+1.3
3,313,876	+		IAI47_15715	0.90	+0.7
3,313,876	+		IAI47_15715	0.90	-0.0
3,313,876	+		IAI47_15715	0.90	+0.4
3,313,877	-				-1.1
3,313,877	-				+0.6
3,313,877	-				-0.7
3,313,877	-				+0.1
3,313,877	-				-0.1
3,313,877	-				+2.2
3,313,877	-				+1.5
3,313,879	+				+0.5
3,313,913	+				+1.8
3,313,913	+				-0.1
3,313,913	+				+1.5
3,313,913	+				+0.1
3,313,913	+				-0.5
3,313,914	-				-0.9
3,313,914	-				+0.8
3,313,916	+				+0.4
3,313,916	+				-0.5
3,313,927	+				+4.0
3,314,008	+				-0.9
3,314,008	+				+1.3
3,314,009	-				-1.5
3,314,042	-				-1.0
3,314,042	-				+2.8
3,314,042	-				+0.1
3,314,042	-				-0.1
3,314,042	-				+0.7
3,314,062	+				+1.1
3,314,084	+				-3.5
3,314,084	+				-0.5
3,314,084	+				-1.5
3,314,084	+				+0.6
3,314,085	-				+1.1
3,314,085	-				+1.0
3,314,118	+				+0.1
3,314,118	+				+0.3
3,314,118	+				+0.4
3,314,119	-				-2.3
3,314,143	+				-1.3
3,314,144	-				-0.7
3,314,144	-				-2.4
3,314,149	+				-1.5
3,314,149	+				+1.7
3,314,149	+				-0.3
3,314,150	-				+0.2
3,314,199	+				-3.8
3,314,215	+				-0.0
3,314,216	-				-0.7
3,314,348	+		IAI47_15720	0.17	-0.4
3,314,383	+		IAI47_15720	0.19	-3.5
3,314,384	-		IAI47_15720	0.19	-1.2
3,314,407	+		IAI47_15720	0.21	-0.1
3,314,407	+		IAI47_15720	0.21	-0.6
3,314,408	-		IAI47_15720	0.21	-0.6
3,314,408	-		IAI47_15720	0.21	-3.2
3,314,408	-		IAI47_15720	0.21	-1.2
3,314,408	-		IAI47_15720	0.21	+0.9
3,314,408	-		IAI47_15720	0.21	-0.1
3,314,413	+		IAI47_15720	0.22	-0.1
3,314,413	+		IAI47_15720	0.22	+0.6
3,314,482	+		IAI47_15720	0.27	+0.5
3,314,482	+		IAI47_15720	0.27	-1.2
3,314,483	+		IAI47_15720	0.27	+2.7
3,314,525	+		IAI47_15720	0.30	-0.2
3,314,525	+		IAI47_15720	0.30	-0.2
3,314,525	+		IAI47_15720	0.30	-0.7
3,314,525	+		IAI47_15720	0.30	+0.3
3,314,525	+		IAI47_15720	0.30	+0.5
3,314,525	+		IAI47_15720	0.30	+0.9
3,314,525	+		IAI47_15720	0.30	+0.2
3,314,526	-		IAI47_15720	0.30	-0.1
3,314,526	-		IAI47_15720	0.30	-0.9
3,314,526	-		IAI47_15720	0.30	+0.4
3,314,526	-		IAI47_15720	0.30	+1.6
3,314,526	-		IAI47_15720	0.30	+1.2
3,314,527	+		IAI47_15720	0.31	-0.0
3,314,527	+		IAI47_15720	0.31	-0.1
3,314,527	+		IAI47_15720	0.31	-0.1
3,314,527	+		IAI47_15720	0.31	+0.3
3,314,527	+		IAI47_15720	0.31	+1.1
3,314,559	-		IAI47_15720	0.33	-0.9
3,314,578	+		IAI47_15720	0.34	-0.2
3,314,578	+		IAI47_15720	0.34	-2.1
3,314,578	+		IAI47_15720	0.34	-0.0
3,314,578	+		IAI47_15720	0.34	+1.1
3,314,579	-		IAI47_15720	0.35	+1.3
3,314,583	+		IAI47_15720	0.35	-0.7
3,314,583	+		IAI47_15720	0.35	-0.6
3,314,583	+		IAI47_15720	0.35	+0.6
3,314,583	+		IAI47_15720	0.35	+1.0
3,314,583	+		IAI47_15720	0.35	-2.7
3,314,583	+		IAI47_15720	0.35	-2.0
3,314,584	-		IAI47_15720	0.35	-0.9
3,314,592	-		IAI47_15720	0.36	+1.7
3,314,663	+		IAI47_15720	0.41	-0.1
3,314,691	+		IAI47_15720	0.43	-2.7
3,314,691	+		IAI47_15720	0.43	+2.0
3,314,691	+		IAI47_15720	0.43	+1.4
3,314,691	+		IAI47_15720	0.43	-0.6
3,314,691	+		IAI47_15720	0.43	+0.1
3,314,691	+		IAI47_15720	0.43	-0.2
3,314,691	+		IAI47_15720	0.43	-0.0
3,314,692	-		IAI47_15720	0.43	+0.1
3,314,692	-		IAI47_15720	0.43	+0.3
3,314,692	-		IAI47_15720	0.43	-2.8
3,314,735	-		IAI47_15720	0.47	-1.3
3,314,751	+		IAI47_15720	0.48	+0.8
3,314,752	-		IAI47_15720	0.48	+0.2
3,314,752	-		IAI47_15720	0.48	-1.8
3,314,752	-		IAI47_15720	0.48	-2.0
3,314,752	-		IAI47_15720	0.48	+1.6
3,314,752	-		IAI47_15720	0.48	+1.4
3,314,770	+		IAI47_15720	0.49	-0.5
3,314,770	+		IAI47_15720	0.49	+1.5
3,314,770	+		IAI47_15720	0.49	-2.0
3,314,770	+		IAI47_15720	0.49	-1.9
3,314,771	-		IAI47_15720	0.49	-1.7
3,314,771	-		IAI47_15720	0.49	-0.7
3,314,771	-		IAI47_15720	0.49	-0.6
3,314,771	-		IAI47_15720	0.49	+1.0
3,314,794	+		IAI47_15720	0.51	+2.0
3,314,794	+		IAI47_15720	0.51	+0.2
3,314,794	+		IAI47_15720	0.51	-0.1
3,314,794	+		IAI47_15720	0.51	-2.5
3,314,794	+		IAI47_15720	0.51	+2.5
3,314,794	+		IAI47_15720	0.51	-0.8
3,314,794	+		IAI47_15720	0.51	-1.7
3,314,795	-		IAI47_15720	0.51	+0.0
3,314,795	-				+1.9
3,314,795	-		IAI47_15720	0.51	-1.7
3,314,795	-		IAI47_15720	0.51	-1.6
3,314,795	-		IAI47_15720	0.51	-0.2
3,314,855	-		IAI47_15720	0.56	-0.9
3,314,861	-		IAI47_15720	0.56	+0.5
3,314,861	-		IAI47_15720	0.56	-3.3
3,314,861	-		IAI47_15720	0.56	-2.0
3,314,861	-		IAI47_15720	0.56	+0.6
3,314,896	+		IAI47_15720	0.59	+1.9
3,314,896	+		IAI47_15720	0.59	-0.9
3,314,896	+		IAI47_15720	0.59	-1.4
3,315,064	+		IAI47_15720	0.72	+0.4
3,315,064	+		IAI47_15720	0.72	+0.1
3,315,065	-		IAI47_15720	0.72	-0.9
3,315,092	+		IAI47_15720	0.74	-0.4
3,315,092	+		IAI47_15720	0.74	-0.5
3,315,092	+		IAI47_15720	0.74	+1.3
3,315,093	-		IAI47_15720	0.74	+0.8
3,315,093	-		IAI47_15720	0.74	-0.1
3,315,098	+		IAI47_15720	0.75	+1.3
3,315,098	+		IAI47_15720	0.75	+0.9
3,315,099	-		IAI47_15720	0.75	-0.5
3,315,099	-		IAI47_15720	0.75	-1.3
3,315,099	-		IAI47_15720	0.75	-1.6
3,315,099	-		IAI47_15720	0.75	-1.3
3,315,099	-		IAI47_15720	0.75	+0.6
3,315,099	-		IAI47_15720	0.75	-2.3
3,315,142	+		IAI47_15720	0.78	-0.5
3,315,142	+		IAI47_15720	0.78	-0.1
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3,315,305	-				-0.3
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3,315,307	+				-2.1
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