Strain Fitness in Pantoea sp. MT58 around IAI47_07710

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,632,653	-		IAI47_07705	0.11	-1.5
1,632,735	+		IAI47_07705	0.18	-0.3
1,632,735	+		IAI47_07705	0.18	+0.6
1,632,738	+		IAI47_07705	0.18	-1.8
1,632,739	-		IAI47_07705	0.19	-0.6
1,632,757	+		IAI47_07705	0.20	-0.9
1,632,758	-		IAI47_07705	0.20	+1.5
1,632,761	+		IAI47_07705	0.21	+1.4
1,632,761	+		IAI47_07705	0.21	+1.2
1,632,761	+		IAI47_07705	0.21	+0.8
1,632,762	-		IAI47_07705	0.21	+0.2
1,632,762	-		IAI47_07705	0.21	-0.3
1,632,762	-		IAI47_07705	0.21	+0.6
1,632,762	-		IAI47_07705	0.21	-1.6
1,632,766	+		IAI47_07705	0.21	-0.3
1,632,766	+		IAI47_07705	0.21	+0.9
1,632,767	-		IAI47_07705	0.21	+0.3
1,632,767	-		IAI47_07705	0.21	-1.5
1,632,818	-		IAI47_07705	0.26	+0.2
1,632,820	+		IAI47_07705	0.26	-0.2
1,632,821	-		IAI47_07705	0.26	+0.7
1,632,821	-		IAI47_07705	0.26	+1.1
1,632,821	-		IAI47_07705	0.26	-0.6
1,632,823	+		IAI47_07705	0.26	+0.9
1,632,823	+		IAI47_07705	0.26	-1.8
1,632,823	+		IAI47_07705	0.26	+0.1
1,632,823	+		IAI47_07705	0.26	+3.0
1,632,823	+		IAI47_07705	0.26	-1.3
1,632,824	-		IAI47_07705	0.26	+1.5
1,632,824	-		IAI47_07705	0.26	+0.5
1,632,846	+		IAI47_07705	0.28	+0.0
1,632,878	+		IAI47_07705	0.31	+1.1
1,632,878	+		IAI47_07705	0.31	+1.7
1,632,878	+		IAI47_07705	0.31	-0.9
1,632,878	+		IAI47_07705	0.31	+1.7
1,632,878	+		IAI47_07705	0.31	-1.3
1,632,879	-		IAI47_07705	0.31	+1.7
1,632,879	-		IAI47_07705	0.31	+1.1
1,632,879	-		IAI47_07705	0.31	-0.2
1,632,879	-		IAI47_07705	0.31	-2.2
1,632,888	-		IAI47_07705	0.32	-0.3
1,632,895	+		IAI47_07705	0.33	-0.9
1,632,895	+		IAI47_07705	0.33	-2.9
1,632,899	-		IAI47_07705	0.33	+0.5
1,632,940	+		IAI47_07705	0.37	+1.3
1,632,940	+		IAI47_07705	0.37	+1.0
1,632,941	-		IAI47_07705	0.37	-0.1
1,632,941	-		IAI47_07705	0.37	+0.8
1,632,944	+		IAI47_07705	0.37	-0.6
1,632,945	-		IAI47_07705	0.37	+2.9
1,632,975	+		IAI47_07705	0.40	-0.5
1,632,976	-		IAI47_07705	0.40	-1.3
1,633,036	+		IAI47_07705	0.46	+1.7
1,633,037	-		IAI47_07705	0.46	-0.3
1,633,069	+		IAI47_07705	0.49	+1.4
1,633,083	+		IAI47_07705	0.50	+0.1
1,633,083	+		IAI47_07705	0.50	+0.3
1,633,084	-		IAI47_07705	0.50	+0.5
1,633,099	+		IAI47_07705	0.52	-2.2
1,633,130	-		IAI47_07705	0.54	-1.6
1,633,130	-		IAI47_07705	0.54	-0.0
1,633,139	-		IAI47_07705	0.55	+0.7
1,633,205	+		IAI47_07705	0.61	-1.6
1,633,205	+		IAI47_07705	0.61	-0.9
1,633,205	+		IAI47_07705	0.61	+0.5
1,633,205	+		IAI47_07705	0.61	-0.7
1,633,205	+		IAI47_07705	0.61	-2.1
1,633,205	+		IAI47_07705	0.61	+0.5
1,633,205	+		IAI47_07705	0.61	+0.5
1,633,206	-		IAI47_07705	0.61	-0.9
1,633,206	-		IAI47_07705	0.61	-0.3
1,633,206	-		IAI47_07705	0.61	-1.5
1,633,206	-		IAI47_07705	0.61	+1.7
1,633,206	-		IAI47_07705	0.61	+0.1
1,633,206	-		IAI47_07705	0.61	+0.9
1,633,252	+		IAI47_07705	0.66	+0.2
1,633,252	+		IAI47_07705	0.66	-0.6
1,633,252	+		IAI47_07705	0.66	-1.3
1,633,253	-		IAI47_07705	0.66	+1.0
1,633,253	-		IAI47_07705	0.66	-1.5
1,633,253	-		IAI47_07705	0.66	+0.8
1,633,253	-		IAI47_07705	0.66	-0.6
1,633,256	+		IAI47_07705	0.66	-2.1
1,633,256	+		IAI47_07705	0.66	-1.9
1,633,256	+		IAI47_07705	0.66	-0.6
1,633,256	+		IAI47_07705	0.66	-2.1
1,633,256	+		IAI47_07705	0.66	+1.9
1,633,256	+		IAI47_07705	0.66	-1.6
1,633,257	-		IAI47_07705	0.66	-0.9
1,633,257	-		IAI47_07705	0.66	+1.4
1,633,257	-		IAI47_07705	0.66	+1.2
1,633,291	+		IAI47_07705	0.69	-0.9
1,633,294	+		IAI47_07705	0.69	-1.0
1,633,294	+		IAI47_07705	0.69	-0.9
1,633,295	-		IAI47_07705	0.70	+0.1
1,633,295	-		IAI47_07705	0.70	-0.6
1,633,325	+		IAI47_07705	0.72	+0.4
1,633,335	-		IAI47_07705	0.73	-1.3
1,633,335	-		IAI47_07705	0.73	+1.1
1,633,432	+		IAI47_07705	0.82	-0.5
1,633,433	-		IAI47_07705	0.82	-1.5
1,633,508	+		IAI47_07705	0.89	-1.1
1,633,509	-		IAI47_07705	0.89	+2.4
1,633,509	-		IAI47_07705	0.89	+0.5
1,633,509	-		IAI47_07705	0.89	+0.2
1,633,534	+				+1.0
1,633,534	+				+0.2
1,633,617	+				+0.4
1,633,618	-				-2.2
1,633,654	+				-2.2
1,633,655	-				-0.1
1,633,655	-				-1.6
1,633,680	+				-0.6
1,633,680	+				-0.3
1,633,699	+				+1.1
1,633,805	+		IAI47_07710	0.24	+0.5
1,633,958	+		IAI47_07710	0.48	+0.9
1,633,959	-		IAI47_07710	0.48	-2.8
1,634,060	+		IAI47_07710	0.63	-1.8
1,634,100	+		IAI47_07710	0.70	+2.6
1,634,100	+		IAI47_07710	0.70	-2.1
1,634,100	+		IAI47_07710	0.70	+0.5
1,634,100	+		IAI47_07710	0.70	-0.1
1,634,100	+		IAI47_07710	0.70	-0.3
1,634,100	+		IAI47_07710	0.70	-1.5
1,634,100	+		IAI47_07710	0.70	-2.3
1,634,100	+		IAI47_07710	0.70	-0.7
1,634,100	+		IAI47_07710	0.70	-0.6
1,634,100	+		IAI47_07710	0.70	+0.5
1,634,101	-		IAI47_07710	0.70	+0.7
1,634,101	-		IAI47_07710	0.70	+1.5
1,634,101	-		IAI47_07710	0.70	-1.9
1,634,101	-		IAI47_07710	0.70	+1.8
1,634,101	-		IAI47_07710	0.70	-0.8
1,634,101	-		IAI47_07710	0.70	-2.0
1,634,101	-		IAI47_07710	0.70	-0.2
1,634,102	+		IAI47_07710	0.70	+2.3
1,634,107	+		IAI47_07710	0.71	+0.3
1,634,144	+		IAI47_07710	0.76	+1.4
1,634,144	+		IAI47_07710	0.76	-0.2
1,634,145	-		IAI47_07710	0.77	+4.3
1,634,145	-		IAI47_07710	0.77	-0.7
1,634,248	+				-1.9
1,634,248	+				+3.2
1,634,252	+				-2.4
1,634,252	+				-1.6
1,634,252	+				+1.2
1,634,252	+				+2.9
1,634,252	+				-0.7
1,634,253	-				-0.9
1,634,253	-				+0.1
1,634,433	+				-0.1
1,634,434	-				+0.1
1,634,490	+				-0.3
1,634,506	+				-0.5
1,634,506	+				+0.7
1,634,506	+				+2.4
1,634,507	-				+0.3
1,634,507	-				-0.0
1,634,513	-				+1.3
1,634,513	-				-0.6
1,634,565	+				+0.5
1,634,565	+				-3.1
1,634,566	-				-0.1
1,634,618	-				-2.4
1,634,627	+				-0.5
1,634,628	-				-1.5
1,634,632	-				+2.7
1,634,705	-				+0.7
1,634,750	+				-0.9
1,634,751	-				-1.3
1,634,792	-				-0.6
1,634,801	-				-1.8
1,634,827	-				+1.0
1,634,832	+				+1.0
1,634,832	+				-0.6
1,634,837	-				+1.5
1,634,864	+				+0.2
1,634,868	+				-1.9
1,634,869	-				+0.9
1,634,889	+				+1.7
1,634,890	-				+1.0
1,634,895	-				+1.9
1,634,979	+				+1.6
1,634,981	+				+0.7
1,634,981	+				+1.6
1,634,981	+				+0.2
1,634,981	+				+1.5
1,634,982	-				-0.5
1,634,982	-				-0.5
1,634,982	-				-1.1
1,634,982	-				-1.3
1,634,982	-				-0.8
1,634,982	-				+1.0
1,634,995	-				+0.7
1,635,016	-				-2.2
1,635,018	-				+1.4
1,635,018	-				+1.2
1,635,033	+				+1.2
1,635,033	+				-0.3
1,635,034	-				-0.5
1,635,034	-				-2.6
1,635,035	+				-1.1
1,635,035	+				+0.1
1,635,036	-				-1.4
1,635,036	-				+0.4
1,635,036	-				-0.6
1,635,036	-				+0.4
1,635,036	-				-1.1
1,635,075	+				+0.7
1,635,146	+		IAI47_07715	0.10	-0.2
1,635,147	-		IAI47_07715	0.10	-1.3
1,635,147	-		IAI47_07715	0.10	-0.4
1,635,147	-		IAI47_07715	0.10	+0.9
1,635,154	+		IAI47_07715	0.11	-1.1
1,635,154	+		IAI47_07715	0.11	-0.3
1,635,154	+		IAI47_07715	0.11	+1.2
1,635,155	-		IAI47_07715	0.11	-1.6
1,635,169	-		IAI47_07715	0.12	+0.3
1,635,235	+		IAI47_07715	0.15	+1.8
1,635,236	-		IAI47_07715	0.15	-1.9
1,635,236	-		IAI47_07715	0.15	-0.8
1,635,236	-		IAI47_07715	0.15	-2.1
1,635,279	+		IAI47_07715	0.17	+1.9
1,635,279	+		IAI47_07715	0.17	-0.5