Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19080 and CSW01_19085 are separated by 120 nucleotides CSW01_19085 and CSW01_19090 are separated by 356 nucleotides
CSW01_19080: CSW01_19080 - alkene reductase, at 945,284 to 946,387
_19080
CSW01_19085: CSW01_19085 - amidinotransferase, at 946,508 to 947,488
_19085
CSW01_19090: CSW01_19090 - ABC transporter ATP-binding protein, at 947,845 to 949,704
_19090
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.642 kb on + strand, within CSW01_19080 at 945.657 kb on - strand, within CSW01_19080 at 945.719 kb on + strand, within CSW01_19080 at 945.722 kb on - strand, within CSW01_19080 at 945.722 kb on - strand, within CSW01_19080 at 945.722 kb on - strand, within CSW01_19080 at 945.755 kb on + strand, within CSW01_19080 at 945.808 kb on - strand, within CSW01_19080 at 945.827 kb on + strand, within CSW01_19080 at 945.890 kb on + strand, within CSW01_19080 at 946.012 kb on - strand, within CSW01_19080 at 946.012 kb on - strand, within CSW01_19080 at 946.023 kb on - strand, within CSW01_19080 at 946.044 kb on + strand, within CSW01_19080 at 946.044 kb on + strand, within CSW01_19080 at 946.084 kb on - strand, within CSW01_19080 at 946.109 kb on + strand, within CSW01_19080 at 946.158 kb on - strand, within CSW01_19080 at 946.208 kb on - strand, within CSW01_19080 at 946.348 kb on - strand at 946.348 kb on - strand at 946.348 kb on - strand at 946.456 kb on + strand at 946.468 kb on + strand at 946.555 kb on - strand at 946.607 kb on - strand, within CSW01_19085 at 946.722 kb on + strand, within CSW01_19085 at 946.948 kb on - strand, within CSW01_19085 at 946.948 kb on - strand, within CSW01_19085 at 946.956 kb on + strand, within CSW01_19085 at 946.974 kb on - strand, within CSW01_19085 at 947.022 kb on - strand, within CSW01_19085 at 947.064 kb on - strand, within CSW01_19085 at 947.184 kb on + strand, within CSW01_19085 at 947.184 kb on + strand, within CSW01_19085 at 947.233 kb on - strand, within CSW01_19085 at 947.238 kb on - strand, within CSW01_19085 at 947.371 kb on - strand, within CSW01_19085 at 947.380 kb on + strand, within CSW01_19085 at 947.439 kb on - strand at 947.593 kb on + strand at 947.707 kb on - strand at 947.715 kb on + strand at 947.723 kb on - strand at 947.743 kb on + strand at 947.743 kb on + strand at 947.743 kb on + strand at 947.743 kb on + strand at 947.743 kb on + strand at 947.743 kb on + strand at 947.751 kb on - strand at 947.751 kb on - strand at 947.751 kb on - strand at 947.751 kb on - strand at 947.751 kb on - strand at 947.876 kb on - strand at 947.893 kb on + strand at 947.895 kb on - strand at 947.912 kb on - strand at 947.971 kb on + strand at 947.971 kb on + strand at 947.979 kb on - strand at 948.020 kb on - strand at 948.097 kb on + strand, within CSW01_19090 at 948.105 kb on - strand, within CSW01_19090 at 948.105 kb on - strand, within CSW01_19090 at 948.159 kb on - strand, within CSW01_19090 at 948.334 kb on - strand, within CSW01_19090 at 948.484 kb on + strand, within CSW01_19090
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 945,642 + CSW01_19080 0.32 -0.7 945,657 - CSW01_19080 0.34 -0.2 945,719 + CSW01_19080 0.39 -0.1 945,722 - CSW01_19080 0.40 +0.2 945,722 - CSW01_19080 0.40 +0.1 945,722 - CSW01_19080 0.40 -1.6 945,755 + CSW01_19080 0.43 -0.4 945,808 - CSW01_19080 0.47 -0.4 945,827 + CSW01_19080 0.49 +0.4 945,890 + CSW01_19080 0.55 -1.1 946,012 - CSW01_19080 0.66 +0.1 946,012 - CSW01_19080 0.66 -0.2 946,023 - CSW01_19080 0.67 -0.3 946,044 + CSW01_19080 0.69 +1.2 946,044 + CSW01_19080 0.69 +1.2 946,084 - CSW01_19080 0.72 -0.3 946,109 + CSW01_19080 0.75 +1.4 946,158 - CSW01_19080 0.79 +0.3 946,208 - CSW01_19080 0.84 -0.9 946,348 - +0.2 946,348 - -0.3 946,348 - +0.8 946,456 + -0.0 946,468 + +0.4 946,555 - -2.4 946,607 - CSW01_19085 0.10 -0.4 946,722 + CSW01_19085 0.22 +0.3 946,948 - CSW01_19085 0.45 -1.0 946,948 - CSW01_19085 0.45 +0.0 946,956 + CSW01_19085 0.46 -1.2 946,974 - CSW01_19085 0.48 +1.4 947,022 - CSW01_19085 0.52 -0.3 947,064 - CSW01_19085 0.57 +2.1 947,184 + CSW01_19085 0.69 -0.3 947,184 + CSW01_19085 0.69 -1.2 947,233 - CSW01_19085 0.74 +0.0 947,238 - CSW01_19085 0.74 -0.2 947,371 - CSW01_19085 0.88 -0.5 947,380 + CSW01_19085 0.89 +0.2 947,439 - +0.6 947,593 + +0.1 947,707 - -0.4 947,715 + +0.9 947,723 - +0.4 947,743 + -0.1 947,743 + +1.3 947,743 + -0.5 947,743 + -0.1 947,743 + +0.1 947,743 + -1.8 947,751 - +0.1 947,751 - -1.1 947,751 - -0.2 947,751 - -0.3 947,751 - +0.3 947,876 - +1.6 947,893 + -0.4 947,895 - -0.6 947,912 - +0.3 947,971 + +0.8 947,971 + +0.4 947,979 - -0.4 948,020 - -0.2 948,097 + CSW01_19090 0.14 -0.2 948,105 - CSW01_19090 0.14 +1.5 948,105 - CSW01_19090 0.14 +0.1 948,159 - CSW01_19090 0.17 -0.9 948,334 - CSW01_19090 0.26 -1.1 948,484 + CSW01_19090 0.34 -0.2
Or see this region's nucleotide sequence