Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18970

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18960 and CSW01_18965 are separated by 137 nucleotidesCSW01_18965 and CSW01_18970 are separated by 511 nucleotidesCSW01_18970 and CSW01_18975 are separated by 8 nucleotides CSW01_18960: CSW01_18960 - quercetin 2,3-dioxygenase, at 914,257 to 915,105 _18960 CSW01_18965: CSW01_18965 - DUF1255 domain-containing protein, at 915,243 to 915,557 _18965 CSW01_18970: CSW01_18970 - DUF2850 domain-containing protein, at 916,069 to 916,509 _18970 CSW01_18975: CSW01_18975 - MFS transporter, at 916,518 to 917,822 _18975 Position (kb) 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 915.315 kb on - strand, within CSW01_18965at 915.341 kb on + strand, within CSW01_18965at 915.369 kb on + strand, within CSW01_18965at 915.385 kb on + strand, within CSW01_18965at 915.385 kb on + strand, within CSW01_18965at 915.393 kb on - strand, within CSW01_18965at 915.393 kb on - strand, within CSW01_18965at 915.429 kb on + strand, within CSW01_18965at 915.429 kb on + strand, within CSW01_18965at 915.454 kb on + strand, within CSW01_18965at 915.462 kb on + strand, within CSW01_18965at 915.462 kb on - strand, within CSW01_18965at 915.499 kb on - strand, within CSW01_18965at 915.554 kb on - strandat 915.586 kb on - strandat 915.590 kb on + strandat 915.632 kb on + strandat 915.646 kb on + strandat 915.654 kb on - strandat 915.654 kb on - strandat 915.672 kb on - strandat 915.673 kb on - strandat 915.781 kb on - strandat 915.803 kb on - strandat 915.875 kb on - strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.012 kb on - strandat 916.141 kb on - strand, within CSW01_18970at 916.156 kb on + strand, within CSW01_18970at 916.392 kb on + strand, within CSW01_18970at 916.392 kb on + strand, within CSW01_18970at 916.397 kb on + strand, within CSW01_18970at 916.397 kb on + strand, within CSW01_18970at 916.400 kb on - strand, within CSW01_18970at 916.400 kb on - strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.467 kb on + strandat 916.467 kb on + strandat 916.467 kb on + strandat 916.467 kb on + strandat 916.475 kb on - strandat 916.475 kb on - strandat 916.475 kb on - strandat 916.526 kb on + strandat 916.561 kb on - strandat 916.592 kb on - strandat 916.600 kb on + strandat 916.608 kb on - strandat 916.613 kb on - strandat 916.736 kb on - strand, within CSW01_18975at 916.797 kb on + strand, within CSW01_18975at 916.798 kb on - strand, within CSW01_18975at 916.838 kb on + strand, within CSW01_18975at 916.918 kb on + strand, within CSW01_18975at 916.966 kb on + strand, within CSW01_18975at 916.966 kb on + strand, within CSW01_18975at 916.974 kb on - strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.987 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.213 kb on - strand, within CSW01_18975at 917.273 kb on + strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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915,315 - CSW01_18965 0.23 -0.2
915,341 + CSW01_18965 0.31 +0.0
915,369 + CSW01_18965 0.40 -1.0
915,385 + CSW01_18965 0.45 +0.2
915,385 + CSW01_18965 0.45 -0.0
915,393 - CSW01_18965 0.48 -0.8
915,393 - CSW01_18965 0.48 -0.2
915,429 + CSW01_18965 0.59 -0.2
915,429 + CSW01_18965 0.59 +0.1
915,454 + CSW01_18965 0.67 +0.4
915,462 + CSW01_18965 0.70 +0.7
915,462 - CSW01_18965 0.70 -2.5
915,499 - CSW01_18965 0.81 +0.9
915,554 - +0.3
915,586 - +0.2
915,590 + -0.0
915,632 + -1.1
915,646 + +0.7
915,654 - +0.2
915,654 - -1.0
915,672 - -0.5
915,673 - -0.3
915,781 - +0.1
915,803 - -0.4
915,875 - +0.7
915,999 + +0.3
915,999 + +0.7
915,999 + -0.4
915,999 + -0.2
915,999 + +0.2
916,007 - -0.4
916,007 - +0.3
916,007 - +0.6
916,007 - +1.6
916,007 - -0.4
916,012 - -0.9
916,141 - CSW01_18970 0.16 +0.7
916,156 + CSW01_18970 0.20 +0.7
916,392 + CSW01_18970 0.73 +0.3
916,392 + CSW01_18970 0.73 -0.1
916,397 + CSW01_18970 0.74 +2.0
916,397 + CSW01_18970 0.74 +0.5
916,400 - CSW01_18970 0.75 -0.4
916,400 - CSW01_18970 0.75 +0.8
916,424 + CSW01_18970 0.80 +0.6
916,424 + CSW01_18970 0.80 +1.0
916,424 + CSW01_18970 0.80 +0.2
916,432 - CSW01_18970 0.82 -0.5
916,432 - CSW01_18970 0.82 +0.7
916,432 - CSW01_18970 0.82 -0.4
916,467 + +0.2
916,467 + +1.0
916,467 + +1.7
916,467 + -0.5
916,475 - +0.6
916,475 - -2.3
916,475 - +0.2
916,526 + +0.3
916,561 - +0.3
916,592 - -0.2
916,600 + +0.0
916,608 - +0.4
916,613 - +0.4
916,736 - CSW01_18975 0.17 +0.4
916,797 + CSW01_18975 0.21 -0.3
916,798 - CSW01_18975 0.21 +0.7
916,838 + CSW01_18975 0.25 +1.2
916,918 + CSW01_18975 0.31 +0.8
916,966 + CSW01_18975 0.34 -0.7
916,966 + CSW01_18975 0.34 +0.3
916,974 - CSW01_18975 0.35 +0.2
916,976 + CSW01_18975 0.35 -0.6
916,976 + CSW01_18975 0.35 -2.8
916,976 + CSW01_18975 0.35 +0.2
916,987 + CSW01_18975 0.36 +0.1
917,204 + CSW01_18975 0.53 +0.9
917,204 + CSW01_18975 0.53 -0.5
917,213 - CSW01_18975 0.53 -0.0
917,273 + CSW01_18975 0.58 +0.3
917,474 - CSW01_18975 0.73 -1.1
917,474 - CSW01_18975 0.73 -0.8

Or see this region's nucleotide sequence