Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18935

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18930 and CSW01_18935 are separated by 286 nucleotidesCSW01_18935 and CSW01_18940 are separated by 24 nucleotides CSW01_18930: CSW01_18930 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 908,384 to 908,992 _18930 CSW01_18935: CSW01_18935 - DUF3541 domain-containing protein, at 909,279 to 910,487 _18935 CSW01_18940: CSW01_18940 - EamA family transporter, at 910,512 to 911,435 _18940 Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 908.295 kb on - strandat 908.610 kb on + strand, within CSW01_18930at 908.618 kb on - strand, within CSW01_18930at 908.620 kb on + strand, within CSW01_18930at 908.620 kb on + strand, within CSW01_18930at 908.630 kb on + strand, within CSW01_18930at 908.703 kb on - strand, within CSW01_18930at 908.729 kb on + strand, within CSW01_18930at 908.737 kb on - strand, within CSW01_18930at 908.737 kb on - strand, within CSW01_18930at 908.758 kb on - strand, within CSW01_18930at 908.802 kb on + strand, within CSW01_18930at 908.810 kb on - strand, within CSW01_18930at 908.810 kb on - strand, within CSW01_18930at 908.906 kb on + strand, within CSW01_18930at 908.924 kb on - strand, within CSW01_18930at 909.076 kb on + strandat 909.082 kb on + strandat 909.090 kb on - strandat 909.193 kb on + strandat 909.198 kb on + strandat 909.201 kb on - strandat 909.201 kb on - strandat 909.201 kb on - strandat 909.214 kb on - strandat 909.216 kb on + strandat 909.307 kb on + strandat 909.412 kb on - strand, within CSW01_18935at 909.423 kb on + strand, within CSW01_18935at 909.431 kb on - strand, within CSW01_18935at 909.448 kb on + strand, within CSW01_18935at 909.522 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.632 kb on + strand, within CSW01_18935at 909.648 kb on + strand, within CSW01_18935at 909.653 kb on + strand, within CSW01_18935at 909.658 kb on + strand, within CSW01_18935at 909.661 kb on - strand, within CSW01_18935at 909.712 kb on + strand, within CSW01_18935at 909.712 kb on + strand, within CSW01_18935at 909.793 kb on + strand, within CSW01_18935at 909.801 kb on - strand, within CSW01_18935at 909.801 kb on - strand, within CSW01_18935at 909.871 kb on + strand, within CSW01_18935at 909.879 kb on - strand, within CSW01_18935at 909.887 kb on - strand, within CSW01_18935at 909.910 kb on - strand, within CSW01_18935at 909.992 kb on - strand, within CSW01_18935at 910.006 kb on + strand, within CSW01_18935at 910.006 kb on + strand, within CSW01_18935at 910.006 kb on + strand, within CSW01_18935at 910.014 kb on - strand, within CSW01_18935at 910.165 kb on + strand, within CSW01_18935at 910.228 kb on + strand, within CSW01_18935at 910.305 kb on - strand, within CSW01_18935at 910.346 kb on + strand, within CSW01_18935at 910.444 kb on - strandat 910.493 kb on + strandat 910.543 kb on + strandat 910.551 kb on - strandat 910.583 kb on - strandat 910.651 kb on + strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.756 kb on + strand, within CSW01_18940at 910.759 kb on - strand, within CSW01_18940at 910.808 kb on + strand, within CSW01_18940at 910.816 kb on - strand, within CSW01_18940at 910.816 kb on - strand, within CSW01_18940at 910.920 kb on + strand, within CSW01_18940at 910.925 kb on + strand, within CSW01_18940at 910.928 kb on - strand, within CSW01_18940at 910.962 kb on + strand, within CSW01_18940at 910.970 kb on - strand, within CSW01_18940at 910.974 kb on + strand, within CSW01_18940at 910.974 kb on + strand, within CSW01_18940at 910.975 kb on - strand, within CSW01_18940at 911.061 kb on + strand, within CSW01_18940at 911.116 kb on + strand, within CSW01_18940at 911.116 kb on + strand, within CSW01_18940at 911.132 kb on - strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.137 kb on - strand, within CSW01_18940at 911.142 kb on - strand, within CSW01_18940at 911.142 kb on - strand, within CSW01_18940at 911.147 kb on - strand, within CSW01_18940at 911.169 kb on + strand, within CSW01_18940at 911.188 kb on + strand, within CSW01_18940at 911.440 kb on - strandat 911.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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908,295 - +0.2
908,610 + CSW01_18930 0.37 +0.2
908,618 - CSW01_18930 0.38 +0.6
908,620 + CSW01_18930 0.39 +0.0
908,620 + CSW01_18930 0.39 -0.6
908,630 + CSW01_18930 0.40 -0.4
908,703 - CSW01_18930 0.52 -0.1
908,729 + CSW01_18930 0.57 -0.5
908,737 - CSW01_18930 0.58 +0.4
908,737 - CSW01_18930 0.58 -0.6
908,758 - CSW01_18930 0.61 -0.5
908,802 + CSW01_18930 0.69 +0.1
908,810 - CSW01_18930 0.70 -0.6
908,810 - CSW01_18930 0.70 +0.3
908,906 + CSW01_18930 0.86 -1.0
908,924 - CSW01_18930 0.89 +0.4
909,076 + -1.0
909,082 + -0.2
909,090 - -0.6
909,193 + +0.5
909,198 + +0.5
909,201 - +2.4
909,201 - +1.5
909,201 - +0.2
909,214 - -0.7
909,216 + +0.5
909,307 + +0.7
909,412 - CSW01_18935 0.11 -0.3
909,423 + CSW01_18935 0.12 +0.7
909,431 - CSW01_18935 0.13 +1.0
909,448 + CSW01_18935 0.14 +0.5
909,522 - CSW01_18935 0.20 +0.4
909,552 - CSW01_18935 0.23 -0.1
909,552 - CSW01_18935 0.23 +0.8
909,552 - CSW01_18935 0.23 -0.3
909,632 + CSW01_18935 0.29 +0.4
909,648 + CSW01_18935 0.31 +0.9
909,653 + CSW01_18935 0.31 +1.0
909,658 + CSW01_18935 0.31 +1.9
909,661 - CSW01_18935 0.32 -0.4
909,712 + CSW01_18935 0.36 +0.5
909,712 + CSW01_18935 0.36 +0.8
909,793 + CSW01_18935 0.43 +2.2
909,801 - CSW01_18935 0.43 -1.7
909,801 - CSW01_18935 0.43 +1.4
909,871 + CSW01_18935 0.49 -0.0
909,879 - CSW01_18935 0.50 +0.2
909,887 - CSW01_18935 0.50 -0.7
909,910 - CSW01_18935 0.52 -0.6
909,992 - CSW01_18935 0.59 +0.2
910,006 + CSW01_18935 0.60 -0.4
910,006 + CSW01_18935 0.60 -1.1
910,006 + CSW01_18935 0.60 +1.6
910,014 - CSW01_18935 0.61 +0.5
910,165 + CSW01_18935 0.73 -0.5
910,228 + CSW01_18935 0.78 -3.3
910,305 - CSW01_18935 0.85 -0.1
910,346 + CSW01_18935 0.88 -0.3
910,444 - -0.1
910,493 + -1.3
910,543 + -0.4
910,551 - -0.4
910,583 - -0.4
910,651 + CSW01_18940 0.15 +1.1
910,659 - CSW01_18940 0.16 +0.7
910,659 - CSW01_18940 0.16 +0.9
910,659 - CSW01_18940 0.16 +0.7
910,756 + CSW01_18940 0.26 +0.5
910,759 - CSW01_18940 0.27 +0.5
910,808 + CSW01_18940 0.32 -0.6
910,816 - CSW01_18940 0.33 +0.2
910,816 - CSW01_18940 0.33 -2.1
910,920 + CSW01_18940 0.44 -0.4
910,925 + CSW01_18940 0.45 +0.1
910,928 - CSW01_18940 0.45 -0.4
910,962 + CSW01_18940 0.49 +0.3
910,970 - CSW01_18940 0.50 -0.6
910,974 + CSW01_18940 0.50 +2.0
910,974 + CSW01_18940 0.50 +1.0
910,975 - CSW01_18940 0.50 -0.6
911,061 + CSW01_18940 0.59 +0.0
911,116 + CSW01_18940 0.65 -0.0
911,116 + CSW01_18940 0.65 -0.3
911,132 - CSW01_18940 0.67 -1.9
911,134 + CSW01_18940 0.67 +0.6
911,134 + CSW01_18940 0.67 +0.3
911,134 + CSW01_18940 0.67 -0.2
911,134 + CSW01_18940 0.67 +0.5
911,134 + CSW01_18940 0.67 +0.1
911,137 - CSW01_18940 0.68 +0.4
911,142 - CSW01_18940 0.68 -0.0
911,142 - CSW01_18940 0.68 +0.4
911,147 - CSW01_18940 0.69 -0.4
911,169 + CSW01_18940 0.71 +1.0
911,188 + CSW01_18940 0.73 +1.6
911,440 - -0.2
911,445 - +0.2

Or see this region's nucleotide sequence