Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18875

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18865 and CSW01_18870 are separated by 4 nucleotidesCSW01_18870 and CSW01_18875 are separated by 137 nucleotidesCSW01_18875 and CSW01_18880 are separated by 206 nucleotidesCSW01_18880 and CSW01_18885 are separated by 166 nucleotides CSW01_18865: CSW01_18865 - spermidine acetyltransferase, at 897,393 to 897,914 _18865 CSW01_18870: CSW01_18870 - transcriptional regulator, at 897,919 to 898,164 _18870 CSW01_18875: CSW01_18875 - SM-20 protein, at 898,302 to 898,919 _18875 CSW01_18880: CSW01_18880 - hypothetical protein, at 899,126 to 899,446 _18880 CSW01_18885: CSW01_18885 - helix-turn-helix transcriptional regulator, at 899,613 to 900,287 _18885 Position (kb) 898 899Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 897.302 kb on + strandat 897.310 kb on - strandat 897.310 kb on - strandat 897.310 kb on - strandat 897.492 kb on - strand, within CSW01_18865at 897.635 kb on - strand, within CSW01_18865at 897.675 kb on + strand, within CSW01_18865at 897.675 kb on + strand, within CSW01_18865at 897.773 kb on + strand, within CSW01_18865at 897.773 kb on + strand, within CSW01_18865at 897.781 kb on - strand, within CSW01_18865at 897.781 kb on - strand, within CSW01_18865at 897.781 kb on - strand, within CSW01_18865at 897.781 kb on - strand, within CSW01_18865at 897.882 kb on - strandat 897.924 kb on - strandat 897.962 kb on - strand, within CSW01_18870at 898.003 kb on + strand, within CSW01_18870at 898.013 kb on - strand, within CSW01_18870at 898.013 kb on - strand, within CSW01_18870at 898.053 kb on - strand, within CSW01_18870at 898.097 kb on - strand, within CSW01_18870at 898.181 kb on - strandat 898.186 kb on - strandat 898.186 kb on - strandat 898.206 kb on + strandat 898.206 kb on + strandat 898.251 kb on + strandat 898.270 kb on - strandat 898.317 kb on - strandat 898.319 kb on + strandat 898.360 kb on + strandat 898.522 kb on + strand, within CSW01_18875at 898.569 kb on + strand, within CSW01_18875at 898.577 kb on + strand, within CSW01_18875at 898.592 kb on - strand, within CSW01_18875at 898.624 kb on + strand, within CSW01_18875at 898.658 kb on + strand, within CSW01_18875at 898.663 kb on + strand, within CSW01_18875at 898.671 kb on - strand, within CSW01_18875at 898.692 kb on + strand, within CSW01_18875at 898.700 kb on - strand, within CSW01_18875at 898.700 kb on - strand, within CSW01_18875at 898.817 kb on + strand, within CSW01_18875at 898.817 kb on + strand, within CSW01_18875at 898.824 kb on + strand, within CSW01_18875at 898.825 kb on - strand, within CSW01_18875at 898.825 kb on - strand, within CSW01_18875at 898.825 kb on - strand, within CSW01_18875at 898.840 kb on - strand, within CSW01_18875at 899.146 kb on - strandat 899.263 kb on + strand, within CSW01_18880at 899.263 kb on + strand, within CSW01_18880at 899.271 kb on - strand, within CSW01_18880at 899.279 kb on - strand, within CSW01_18880at 899.324 kb on - strand, within CSW01_18880at 899.400 kb on - strand, within CSW01_18880at 899.424 kb on + strandat 899.459 kb on - strandat 899.460 kb on - strandat 899.460 kb on - strandat 899.465 kb on + strandat 899.528 kb on + strandat 899.532 kb on + strandat 899.542 kb on + strandat 899.542 kb on + strandat 899.542 kb on + strandat 899.542 kb on + strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.598 kb on + strandat 899.598 kb on + strandat 899.598 kb on + strandat 899.606 kb on - strandat 899.606 kb on - strandat 899.650 kb on + strandat 899.655 kb on + strandat 899.655 kb on + strandat 899.720 kb on - strand, within CSW01_18885at 899.739 kb on + strand, within CSW01_18885at 899.832 kb on + strand, within CSW01_18885at 899.840 kb on - strand, within CSW01_18885at 899.845 kb on - strand, within CSW01_18885at 899.854 kb on + strand, within CSW01_18885at 899.882 kb on + strand, within CSW01_18885at 899.890 kb on - strand, within CSW01_18885at 899.890 kb on - strand, within CSW01_18885

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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897,302 + +0.1
897,310 - -0.4
897,310 - -0.6
897,310 - -0.4
897,492 - CSW01_18865 0.19 +0.1
897,635 - CSW01_18865 0.46 +0.0
897,675 + CSW01_18865 0.54 +0.5
897,675 + CSW01_18865 0.54 +0.7
897,773 + CSW01_18865 0.73 +0.0
897,773 + CSW01_18865 0.73 +0.4
897,781 - CSW01_18865 0.74 -1.4
897,781 - CSW01_18865 0.74 -0.6
897,781 - CSW01_18865 0.74 +0.6
897,781 - CSW01_18865 0.74 +1.8
897,882 - +0.2
897,924 - -1.7
897,962 - CSW01_18870 0.17 +0.1
898,003 + CSW01_18870 0.34 -1.1
898,013 - CSW01_18870 0.38 +0.6
898,013 - CSW01_18870 0.38 -0.4
898,053 - CSW01_18870 0.54 -0.1
898,097 - CSW01_18870 0.72 -0.4
898,181 - +0.0
898,186 - -2.7
898,186 - -0.4
898,206 + -1.7
898,206 + +0.7
898,251 + -1.1
898,270 - +0.0
898,317 - -0.7
898,319 + +0.2
898,360 + +0.1
898,522 + CSW01_18875 0.36 +1.4
898,569 + CSW01_18875 0.43 -0.2
898,577 + CSW01_18875 0.44 -0.1
898,592 - CSW01_18875 0.47 +0.3
898,624 + CSW01_18875 0.52 -0.0
898,658 + CSW01_18875 0.58 -0.1
898,663 + CSW01_18875 0.58 +0.1
898,671 - CSW01_18875 0.60 +0.1
898,692 + CSW01_18875 0.63 +0.1
898,700 - CSW01_18875 0.64 -0.6
898,700 - CSW01_18875 0.64 -0.6
898,817 + CSW01_18875 0.83 +0.3
898,817 + CSW01_18875 0.83 -2.4
898,824 + CSW01_18875 0.84 -0.2
898,825 - CSW01_18875 0.85 +0.3
898,825 - CSW01_18875 0.85 +1.5
898,825 - CSW01_18875 0.85 +0.0
898,840 - CSW01_18875 0.87 +0.1
899,146 - -0.2
899,263 + CSW01_18880 0.43 -0.7
899,263 + CSW01_18880 0.43 +0.1
899,271 - CSW01_18880 0.45 -0.8
899,279 - CSW01_18880 0.48 -0.0
899,324 - CSW01_18880 0.62 +0.2
899,400 - CSW01_18880 0.85 +0.6
899,424 + -0.2
899,459 - -3.2
899,460 - +0.6
899,460 - +0.1
899,465 + -0.5
899,528 + -0.8
899,532 + +0.0
899,542 + +0.0
899,542 + -0.1
899,542 + +0.7
899,542 + -0.3
899,560 - +0.8
899,560 - +1.3
899,598 + -0.2
899,598 + -0.2
899,598 + +0.2
899,606 - +0.8
899,606 - +0.6
899,650 + -0.3
899,655 + +1.1
899,655 + +0.1
899,720 - CSW01_18885 0.16 +0.3
899,739 + CSW01_18885 0.19 -0.2
899,832 + CSW01_18885 0.32 -0.9
899,840 - CSW01_18885 0.34 +1.3
899,845 - CSW01_18885 0.34 +0.4
899,854 + CSW01_18885 0.36 -0.3
899,882 + CSW01_18885 0.40 +0.3
899,890 - CSW01_18885 0.41 +0.6
899,890 - CSW01_18885 0.41 +0.8

Or see this region's nucleotide sequence