Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18765

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18760 and CSW01_18765 are separated by 62 nucleotidesCSW01_18765 and CSW01_18770 are separated by 110 nucleotidesCSW01_18770 and CSW01_18775 overlap by 4 nucleotides CSW01_18760: CSW01_18760 - dihydroorotase, at 877,030 to 878,058 _18760 CSW01_18765: CSW01_18765 - AraC family transcriptional regulator, at 878,121 to 879,218 _18765 CSW01_18770: CSW01_18770 - DUF805 domain-containing protein, at 879,329 to 879,679 _18770 CSW01_18775: CSW01_18775 - hypothetical protein, at 879,676 to 880,185 _18775 Position (kb) 878 879 880Strain fitness (log2 ratio) -2 -1 0 1at 877.169 kb on + strand, within CSW01_18760at 877.180 kb on - strand, within CSW01_18760at 877.226 kb on - strand, within CSW01_18760at 877.238 kb on - strand, within CSW01_18760at 877.274 kb on - strand, within CSW01_18760at 877.291 kb on + strand, within CSW01_18760at 877.323 kb on + strand, within CSW01_18760at 877.323 kb on + strand, within CSW01_18760at 877.331 kb on - strand, within CSW01_18760at 877.482 kb on - strand, within CSW01_18760at 877.564 kb on + strand, within CSW01_18760at 877.564 kb on + strand, within CSW01_18760at 877.564 kb on + strand, within CSW01_18760at 877.572 kb on - strand, within CSW01_18760at 877.572 kb on - strand, within CSW01_18760at 877.588 kb on + strand, within CSW01_18760at 877.607 kb on + strand, within CSW01_18760at 877.637 kb on - strand, within CSW01_18760at 877.658 kb on - strand, within CSW01_18760at 877.671 kb on + strand, within CSW01_18760at 877.787 kb on - strand, within CSW01_18760at 877.824 kb on - strand, within CSW01_18760at 877.828 kb on + strand, within CSW01_18760at 877.835 kb on - strand, within CSW01_18760at 877.838 kb on + strand, within CSW01_18760at 877.840 kb on + strand, within CSW01_18760at 877.845 kb on - strand, within CSW01_18760at 877.845 kb on - strand, within CSW01_18760at 877.845 kb on - strand, within CSW01_18760at 877.957 kb on - strandat 877.957 kb on - strandat 877.976 kb on - strandat 878.022 kb on - strandat 878.050 kb on + strandat 878.252 kb on + strand, within CSW01_18765at 878.252 kb on + strand, within CSW01_18765at 878.265 kb on - strand, within CSW01_18765at 878.353 kb on + strand, within CSW01_18765at 878.375 kb on + strand, within CSW01_18765at 878.375 kb on + strand, within CSW01_18765at 878.383 kb on - strand, within CSW01_18765at 878.385 kb on + strand, within CSW01_18765at 878.388 kb on - strand, within CSW01_18765at 878.396 kb on + strand, within CSW01_18765at 878.467 kb on + strand, within CSW01_18765at 878.498 kb on + strand, within CSW01_18765at 878.577 kb on + strand, within CSW01_18765at 878.701 kb on - strand, within CSW01_18765at 878.757 kb on - strand, within CSW01_18765at 878.784 kb on - strand, within CSW01_18765at 878.805 kb on - strand, within CSW01_18765at 878.868 kb on + strand, within CSW01_18765at 878.882 kb on - strand, within CSW01_18765at 878.897 kb on + strand, within CSW01_18765at 878.898 kb on - strand, within CSW01_18765at 878.933 kb on + strand, within CSW01_18765at 878.934 kb on + strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.946 kb on - strand, within CSW01_18765at 878.986 kb on + strand, within CSW01_18765at 878.994 kb on - strand, within CSW01_18765at 878.996 kb on + strand, within CSW01_18765at 878.996 kb on + strand, within CSW01_18765at 878.999 kb on - strand, within CSW01_18765at 878.999 kb on - strand, within CSW01_18765at 879.034 kb on + strand, within CSW01_18765at 879.081 kb on - strand, within CSW01_18765at 879.083 kb on + strand, within CSW01_18765at 879.092 kb on + strand, within CSW01_18765at 879.100 kb on - strand, within CSW01_18765at 879.100 kb on - strand, within CSW01_18765at 879.100 kb on - strand, within CSW01_18765at 879.229 kb on - strandat 879.229 kb on - strandat 879.428 kb on + strand, within CSW01_18770at 879.436 kb on - strand, within CSW01_18770at 879.449 kb on - strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.464 kb on - strand, within CSW01_18770at 879.464 kb on - strand, within CSW01_18770at 879.480 kb on - strand, within CSW01_18770at 879.484 kb on - strand, within CSW01_18770at 879.494 kb on - strand, within CSW01_18770at 879.506 kb on + strand, within CSW01_18770at 879.508 kb on + strand, within CSW01_18770at 879.519 kb on + strand, within CSW01_18770at 879.565 kb on - strand, within CSW01_18770at 879.693 kb on - strandat 879.704 kb on + strandat 879.734 kb on - strand, within CSW01_18775at 879.758 kb on - strand, within CSW01_18775at 879.758 kb on - strand, within CSW01_18775at 879.783 kb on - strand, within CSW01_18775at 879.873 kb on - strand, within CSW01_18775at 879.993 kb on - strand, within CSW01_18775at 880.066 kb on - strand, within CSW01_18775

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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877,169 + CSW01_18760 0.14 +0.7
877,180 - CSW01_18760 0.15 +0.4
877,226 - CSW01_18760 0.19 -0.7
877,238 - CSW01_18760 0.20 +0.6
877,274 - CSW01_18760 0.24 +1.2
877,291 + CSW01_18760 0.25 +0.3
877,323 + CSW01_18760 0.28 -0.1
877,323 + CSW01_18760 0.28 +0.9
877,331 - CSW01_18760 0.29 +0.4
877,482 - CSW01_18760 0.44 -0.3
877,564 + CSW01_18760 0.52 +0.1
877,564 + CSW01_18760 0.52 -0.4
877,564 + CSW01_18760 0.52 +0.1
877,572 - CSW01_18760 0.53 -0.4
877,572 - CSW01_18760 0.53 -0.2
877,588 + CSW01_18760 0.54 +0.6
877,607 + CSW01_18760 0.56 -0.4
877,637 - CSW01_18760 0.59 -0.1
877,658 - CSW01_18760 0.61 +1.1
877,671 + CSW01_18760 0.62 +0.9
877,787 - CSW01_18760 0.74 -2.2
877,824 - CSW01_18760 0.77 -0.5
877,828 + CSW01_18760 0.78 +0.5
877,835 - CSW01_18760 0.78 -0.4
877,838 + CSW01_18760 0.79 +0.3
877,840 + CSW01_18760 0.79 -0.6
877,845 - CSW01_18760 0.79 +0.5
877,845 - CSW01_18760 0.79 -1.0
877,845 - CSW01_18760 0.79 -0.0
877,957 - +0.3
877,957 - -0.6
877,976 - +1.5
878,022 - -0.8
878,050 + -0.3
878,252 + CSW01_18765 0.12 -0.3
878,252 + CSW01_18765 0.12 +0.3
878,265 - CSW01_18765 0.13 -0.2
878,353 + CSW01_18765 0.21 -1.4
878,375 + CSW01_18765 0.23 -0.3
878,375 + CSW01_18765 0.23 -0.4
878,383 - CSW01_18765 0.24 +0.1
878,385 + CSW01_18765 0.24 +0.1
878,388 - CSW01_18765 0.24 +0.6
878,396 + CSW01_18765 0.25 -0.4
878,467 + CSW01_18765 0.32 -0.1
878,498 + CSW01_18765 0.34 +0.1
878,577 + CSW01_18765 0.42 +0.3
878,701 - CSW01_18765 0.53 -0.5
878,757 - CSW01_18765 0.58 -0.0
878,784 - CSW01_18765 0.60 -0.9
878,805 - CSW01_18765 0.62 -2.4
878,868 + CSW01_18765 0.68 +0.9
878,882 - CSW01_18765 0.69 -0.4
878,897 + CSW01_18765 0.71 -0.2
878,898 - CSW01_18765 0.71 -0.1
878,933 + CSW01_18765 0.74 -1.2
878,934 + CSW01_18765 0.74 -0.6
878,941 - CSW01_18765 0.75 -1.5
878,941 - CSW01_18765 0.75 +0.3
878,941 - CSW01_18765 0.75 -0.8
878,946 - CSW01_18765 0.75 +1.3
878,986 + CSW01_18765 0.79 -0.2
878,994 - CSW01_18765 0.80 +0.1
878,996 + CSW01_18765 0.80 +0.5
878,996 + CSW01_18765 0.80 -0.4
878,999 - CSW01_18765 0.80 +0.8
878,999 - CSW01_18765 0.80 -0.3
879,034 + CSW01_18765 0.83 +1.2
879,081 - CSW01_18765 0.87 +0.4
879,083 + CSW01_18765 0.88 +0.2
879,092 + CSW01_18765 0.88 +0.2
879,100 - CSW01_18765 0.89 +0.8
879,100 - CSW01_18765 0.89 +1.1
879,100 - CSW01_18765 0.89 -1.4
879,229 - -0.5
879,229 - -0.1
879,428 + CSW01_18770 0.28 -2.1
879,436 - CSW01_18770 0.30 +1.1
879,449 - CSW01_18770 0.34 +0.5
879,456 + CSW01_18770 0.36 +0.9
879,456 + CSW01_18770 0.36 +1.5
879,456 + CSW01_18770 0.36 -1.3
879,464 - CSW01_18770 0.38 +0.4
879,464 - CSW01_18770 0.38 -0.2
879,480 - CSW01_18770 0.43 -0.2
879,484 - CSW01_18770 0.44 -0.2
879,494 - CSW01_18770 0.47 -0.6
879,506 + CSW01_18770 0.50 +1.3
879,508 + CSW01_18770 0.51 +1.0
879,519 + CSW01_18770 0.54 -0.5
879,565 - CSW01_18770 0.67 -0.1
879,693 - +0.6
879,704 + -1.8
879,734 - CSW01_18775 0.11 +0.1
879,758 - CSW01_18775 0.16 -0.7
879,758 - CSW01_18775 0.16 -0.4
879,783 - CSW01_18775 0.21 -0.8
879,873 - CSW01_18775 0.39 +0.0
879,993 - CSW01_18775 0.62 -1.9
880,066 - CSW01_18775 0.76 +0.1

Or see this region's nucleotide sequence