Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18615

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18605 and CSW01_18610 are separated by 105 nucleotidesCSW01_18610 and CSW01_18615 are separated by 76 nucleotidesCSW01_18615 and CSW01_18620 are separated by 167 nucleotides CSW01_18605: CSW01_18605 - hypothetical protein, at 843,240 to 843,638 _18605 CSW01_18610: CSW01_18610 - cytochrome b562 family protein, at 843,744 to 844,127 _18610 CSW01_18615: CSW01_18615 - phosphatase, at 844,204 to 844,950 _18615 CSW01_18620: CSW01_18620 - metal-dependent phosphohydrolase, at 845,118 to 848,063 _18620 Position (kb) 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 843.263 kb on + strandat 843.263 kb on + strandat 843.397 kb on + strand, within CSW01_18605at 843.397 kb on + strand, within CSW01_18605at 843.398 kb on + strand, within CSW01_18605at 843.433 kb on + strand, within CSW01_18605at 843.441 kb on - strand, within CSW01_18605at 843.443 kb on + strand, within CSW01_18605at 843.451 kb on - strand, within CSW01_18605at 843.460 kb on + strand, within CSW01_18605at 843.467 kb on + strand, within CSW01_18605at 843.467 kb on + strand, within CSW01_18605at 843.487 kb on + strand, within CSW01_18605at 843.487 kb on + strand, within CSW01_18605at 843.504 kb on + strand, within CSW01_18605at 843.615 kb on + strandat 843.635 kb on + strandat 843.653 kb on - strandat 843.681 kb on + strandat 843.718 kb on + strandat 843.732 kb on + strandat 843.740 kb on - strandat 843.767 kb on - strandat 843.963 kb on + strand, within CSW01_18610at 843.971 kb on - strand, within CSW01_18610at 844.010 kb on + strand, within CSW01_18610at 844.022 kb on + strand, within CSW01_18610at 844.022 kb on + strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.097 kb on - strandat 844.139 kb on + strandat 844.139 kb on + strandat 844.141 kb on + strandat 844.147 kb on - strandat 844.149 kb on + strandat 844.149 kb on - strandat 844.151 kb on + strandat 844.161 kb on + strandat 844.222 kb on - strandat 844.233 kb on + strandat 844.299 kb on + strand, within CSW01_18615at 844.335 kb on + strand, within CSW01_18615at 844.384 kb on + strand, within CSW01_18615at 844.439 kb on - strand, within CSW01_18615at 844.450 kb on + strand, within CSW01_18615at 844.518 kb on - strand, within CSW01_18615at 844.552 kb on - strand, within CSW01_18615at 844.579 kb on + strand, within CSW01_18615at 844.599 kb on + strand, within CSW01_18615at 844.601 kb on + strand, within CSW01_18615at 844.607 kb on - strand, within CSW01_18615at 844.607 kb on - strand, within CSW01_18615at 844.614 kb on - strand, within CSW01_18615at 844.624 kb on - strand, within CSW01_18615at 844.730 kb on - strand, within CSW01_18615at 844.734 kb on - strand, within CSW01_18615at 844.746 kb on + strand, within CSW01_18615at 844.746 kb on + strand, within CSW01_18615at 844.754 kb on - strand, within CSW01_18615at 844.790 kb on - strand, within CSW01_18615at 844.830 kb on + strand, within CSW01_18615at 844.838 kb on + strand, within CSW01_18615at 844.888 kb on - strandat 844.895 kb on + strandat 844.895 kb on + strandat 844.913 kb on + strandat 844.943 kb on + strandat 844.983 kb on + strandat 844.983 kb on + strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.995 kb on + strandat 844.995 kb on + strandat 845.004 kb on - strandat 845.005 kb on - strandat 845.005 kb on - strandat 845.010 kb on + strandat 845.017 kb on + strandat 845.033 kb on - strandat 845.033 kb on - strandat 845.033 kb on - strandat 845.266 kb on + strandat 845.285 kb on + strandat 845.316 kb on - strandat 845.324 kb on - strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.406 kb on + strandat 845.432 kb on + strand, within CSW01_18620at 845.449 kb on + strand, within CSW01_18620at 845.457 kb on - strand, within CSW01_18620at 845.457 kb on - strand, within CSW01_18620at 845.457 kb on - strand, within CSW01_18620at 845.586 kb on + strand, within CSW01_18620at 845.586 kb on + strand, within CSW01_18620at 845.594 kb on - strand, within CSW01_18620at 845.756 kb on - strand, within CSW01_18620at 845.779 kb on + strand, within CSW01_18620at 845.779 kb on + strand, within CSW01_18620at 845.780 kb on - strand, within CSW01_18620at 845.780 kb on - strand, within CSW01_18620at 845.784 kb on + strand, within CSW01_18620at 845.792 kb on - strand, within CSW01_18620at 845.806 kb on + strand, within CSW01_18620at 845.836 kb on + strand, within CSW01_18620at 845.844 kb on - strand, within CSW01_18620at 845.918 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.932 kb on - strand, within CSW01_18620at 845.934 kb on - strand, within CSW01_18620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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843,263 + -1.3
843,263 + -0.8
843,397 + CSW01_18605 0.39 -0.4
843,397 + CSW01_18605 0.39 +0.0
843,398 + CSW01_18605 0.40 +0.4
843,433 + CSW01_18605 0.48 +0.1
843,441 - CSW01_18605 0.50 -0.0
843,443 + CSW01_18605 0.51 -3.3
843,451 - CSW01_18605 0.53 +0.8
843,460 + CSW01_18605 0.55 -0.4
843,467 + CSW01_18605 0.57 -0.2
843,467 + CSW01_18605 0.57 +0.5
843,487 + CSW01_18605 0.62 -0.6
843,487 + CSW01_18605 0.62 -0.2
843,504 + CSW01_18605 0.66 +0.4
843,615 + -0.2
843,635 + +0.6
843,653 - +0.1
843,681 + -0.1
843,718 + -0.6
843,732 + +0.7
843,740 - +0.3
843,767 - +0.1
843,963 + CSW01_18610 0.57 +0.8
843,971 - CSW01_18610 0.59 +0.9
844,010 + CSW01_18610 0.69 -0.2
844,022 + CSW01_18610 0.72 +0.3
844,022 + CSW01_18610 0.72 +0.7
844,030 - CSW01_18610 0.74 +0.3
844,030 - CSW01_18610 0.74 -0.6
844,030 - CSW01_18610 0.74 +1.0
844,030 - CSW01_18610 0.74 -1.6
844,030 - CSW01_18610 0.74 -0.7
844,030 - CSW01_18610 0.74 +0.3
844,030 - CSW01_18610 0.74 -0.6
844,097 - +0.7
844,139 + -0.3
844,139 + -0.0
844,141 + +0.8
844,147 - +0.2
844,149 + +0.2
844,149 - +0.2
844,151 + +1.5
844,161 + -0.2
844,222 - +0.8
844,233 + -0.2
844,299 + CSW01_18615 0.13 +0.1
844,335 + CSW01_18615 0.18 +1.0
844,384 + CSW01_18615 0.24 -1.7
844,439 - CSW01_18615 0.31 +1.1
844,450 + CSW01_18615 0.33 +0.9
844,518 - CSW01_18615 0.42 +0.1
844,552 - CSW01_18615 0.47 +0.4
844,579 + CSW01_18615 0.50 +0.5
844,599 + CSW01_18615 0.53 +0.2
844,601 + CSW01_18615 0.53 +0.3
844,607 - CSW01_18615 0.54 -0.4
844,607 - CSW01_18615 0.54 -0.1
844,614 - CSW01_18615 0.55 -0.5
844,624 - CSW01_18615 0.56 +1.1
844,730 - CSW01_18615 0.70 -0.4
844,734 - CSW01_18615 0.71 +0.1
844,746 + CSW01_18615 0.73 -0.5
844,746 + CSW01_18615 0.73 -0.9
844,754 - CSW01_18615 0.74 +0.5
844,790 - CSW01_18615 0.78 +0.5
844,830 + CSW01_18615 0.84 +0.2
844,838 + CSW01_18615 0.85 +2.0
844,888 - +0.7
844,895 + -0.4
844,895 + +1.0
844,913 + +0.5
844,943 + +0.3
844,983 + -0.4
844,983 + -0.4
844,991 - -0.0
844,991 - -0.8
844,991 - -0.6
844,991 - -0.5
844,991 - -0.0
844,991 - +0.0
844,995 + +0.3
844,995 + -0.1
845,004 - -1.3
845,005 - +0.7
845,005 - -0.4
845,010 + -0.6
845,017 + +0.0
845,033 - -0.2
845,033 - -0.2
845,033 - -0.9
845,266 + +0.8
845,285 + -0.2
845,316 - +0.3
845,324 - +0.1
845,367 + -0.1
845,367 + -0.4
845,367 + +0.7
845,367 + -0.3
845,367 + -0.7
845,375 - -0.1
845,375 - +0.1
845,375 - +0.6
845,375 - -0.6
845,375 - +0.9
845,375 - -2.9
845,375 - -0.3
845,406 + +0.5
845,432 + CSW01_18620 0.11 +0.2
845,449 + CSW01_18620 0.11 +0.6
845,457 - CSW01_18620 0.12 +0.4
845,457 - CSW01_18620 0.12 +0.8
845,457 - CSW01_18620 0.12 +0.7
845,586 + CSW01_18620 0.16 +0.1
845,586 + CSW01_18620 0.16 +0.9
845,594 - CSW01_18620 0.16 +0.4
845,756 - CSW01_18620 0.22 +0.1
845,779 + CSW01_18620 0.22 +0.1
845,779 + CSW01_18620 0.22 -0.6
845,780 - CSW01_18620 0.22 -0.3
845,780 - CSW01_18620 0.22 -1.7
845,784 + CSW01_18620 0.23 +0.3
845,792 - CSW01_18620 0.23 +0.8
845,806 + CSW01_18620 0.23 +0.8
845,836 + CSW01_18620 0.24 -0.3
845,844 - CSW01_18620 0.25 -0.6
845,918 + CSW01_18620 0.27 +0.4
845,926 + CSW01_18620 0.27 +1.2
845,926 + CSW01_18620 0.27 +1.3
845,926 + CSW01_18620 0.27 -0.5
845,926 + CSW01_18620 0.27 -0.5
845,932 - CSW01_18620 0.28 +0.7
845,934 - CSW01_18620 0.28 +0.4

Or see this region's nucleotide sequence