Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18255

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18245 and CSW01_18250 are separated by 184 nucleotidesCSW01_18250 and CSW01_18255 are separated by 28 nucleotidesCSW01_18255 and CSW01_18260 are separated by 32 nucleotidesCSW01_18260 and CSW01_18265 are separated by 80 nucleotides CSW01_18245: CSW01_18245 - magnesium transporter MgtE, at 762,457 to 763,820 _18245 CSW01_18250: CSW01_18250 - co-chaperone GroES, at 764,005 to 764,295 _18250 CSW01_18255: CSW01_18255 - molecular chaperone GroEL, at 764,324 to 765,916 _18255 CSW01_18260: CSW01_18260 - hypothetical protein, at 765,949 to 766,155 _18260 CSW01_18265: CSW01_18265 - aspartate kinase, at 766,236 to 767,660 _18265 Position (kb) 764 765 766Strain fitness (log2 ratio) -2 -1 0 1 2at 763.330 kb on - strand, within CSW01_18245at 763.398 kb on - strand, within CSW01_18245at 763.454 kb on + strand, within CSW01_18245at 763.456 kb on - strand, within CSW01_18245at 763.506 kb on + strand, within CSW01_18245at 763.560 kb on - strand, within CSW01_18245at 763.732 kb on + strandat 763.753 kb on - strandat 763.839 kb on + strandat 763.913 kb on + strandat 763.951 kb on + strandat 763.959 kb on - strandat 764.134 kb on + strand, within CSW01_18250at 764.134 kb on + strand, within CSW01_18250at 764.134 kb on + strand, within CSW01_18250at 764.141 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.219 kb on - strand, within CSW01_18250at 764.260 kb on - strand, within CSW01_18250at 764.352 kb on - strandat 764.418 kb on + strandat 764.449 kb on + strandat 764.449 kb on + strandat 764.457 kb on - strandat 764.603 kb on + strand, within CSW01_18255at 764.615 kb on + strand, within CSW01_18255at 764.631 kb on + strand, within CSW01_18255at 764.632 kb on + strand, within CSW01_18255at 764.651 kb on + strand, within CSW01_18255at 764.651 kb on + strand, within CSW01_18255at 764.659 kb on - strand, within CSW01_18255at 764.659 kb on - strand, within CSW01_18255at 764.683 kb on + strand, within CSW01_18255at 764.739 kb on - strand, within CSW01_18255at 764.756 kb on + strand, within CSW01_18255at 764.821 kb on + strand, within CSW01_18255at 764.840 kb on + strand, within CSW01_18255at 764.852 kb on + strand, within CSW01_18255at 764.861 kb on + strand, within CSW01_18255at 764.898 kb on - strand, within CSW01_18255at 764.903 kb on - strand, within CSW01_18255at 764.966 kb on - strand, within CSW01_18255at 764.971 kb on - strand, within CSW01_18255at 764.973 kb on - strand, within CSW01_18255at 765.043 kb on + strand, within CSW01_18255at 765.070 kb on - strand, within CSW01_18255at 765.155 kb on + strand, within CSW01_18255at 765.175 kb on + strand, within CSW01_18255at 765.175 kb on + strand, within CSW01_18255at 765.175 kb on + strand, within CSW01_18255at 765.269 kb on + strand, within CSW01_18255at 765.320 kb on + strand, within CSW01_18255at 765.429 kb on + strand, within CSW01_18255at 765.436 kb on + strand, within CSW01_18255at 765.593 kb on + strand, within CSW01_18255at 765.635 kb on - strand, within CSW01_18255at 765.707 kb on + strand, within CSW01_18255at 765.715 kb on - strand, within CSW01_18255at 765.715 kb on - strand, within CSW01_18255at 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.838 kb on - strandat 765.838 kb on - strandat 765.838 kb on - strandat 765.847 kb on + strandat 765.925 kb on + strandat 765.925 kb on + strandat 765.933 kb on - strandat 765.941 kb on - strandat 765.993 kb on + strand, within CSW01_18260at 765.993 kb on + strand, within CSW01_18260at 766.001 kb on - strand, within CSW01_18260at 766.001 kb on - strand, within CSW01_18260at 766.001 kb on - strand, within CSW01_18260at 766.008 kb on + strand, within CSW01_18260at 766.014 kb on + strand, within CSW01_18260at 766.027 kb on + strand, within CSW01_18260at 766.049 kb on + strand, within CSW01_18260at 766.138 kb on + strandat 766.146 kb on - strandat 766.152 kb on - strandat 766.152 kb on - strandat 766.157 kb on - strandat 766.255 kb on + strandat 766.255 kb on + strandat 766.273 kb on - strandat 766.375 kb on + strandat 766.455 kb on + strand, within CSW01_18265at 766.550 kb on + strand, within CSW01_18265at 766.558 kb on - strand, within CSW01_18265at 766.558 kb on - strand, within CSW01_18265at 766.596 kb on + strand, within CSW01_18265at 766.630 kb on + strand, within CSW01_18265at 766.686 kb on + strand, within CSW01_18265at 766.700 kb on + strand, within CSW01_18265at 766.714 kb on + strand, within CSW01_18265at 766.719 kb on + strand, within CSW01_18265at 766.771 kb on - strand, within CSW01_18265at 766.839 kb on - strand, within CSW01_18265at 766.897 kb on - strand, within CSW01_18265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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763,330 - CSW01_18245 0.64 +1.6
763,398 - CSW01_18245 0.69 +0.1
763,454 + CSW01_18245 0.73 +0.1
763,456 - CSW01_18245 0.73 -0.5
763,506 + CSW01_18245 0.77 +0.4
763,560 - CSW01_18245 0.81 +0.2
763,732 + -0.5
763,753 - -0.1
763,839 + +0.8
763,913 + +0.8
763,951 + -0.3
763,959 - +1.8
764,134 + CSW01_18250 0.44 -0.1
764,134 + CSW01_18250 0.44 -0.3
764,134 + CSW01_18250 0.44 -0.6
764,141 - CSW01_18250 0.47 +0.4
764,142 - CSW01_18250 0.47 -2.2
764,142 - CSW01_18250 0.47 +0.1
764,142 - CSW01_18250 0.47 -0.4
764,219 - CSW01_18250 0.74 -0.0
764,260 - CSW01_18250 0.88 +0.9
764,352 - +2.0
764,418 + -0.5
764,449 + -0.4
764,449 + -1.2
764,457 - -0.2
764,603 + CSW01_18255 0.18 +0.3
764,615 + CSW01_18255 0.18 -0.0
764,631 + CSW01_18255 0.19 +0.4
764,632 + CSW01_18255 0.19 +0.1
764,651 + CSW01_18255 0.21 +1.1
764,651 + CSW01_18255 0.21 -0.3
764,659 - CSW01_18255 0.21 +1.1
764,659 - CSW01_18255 0.21 -0.4
764,683 + CSW01_18255 0.23 -0.1
764,739 - CSW01_18255 0.26 -0.1
764,756 + CSW01_18255 0.27 +0.7
764,821 + CSW01_18255 0.31 +0.4
764,840 + CSW01_18255 0.32 +0.4
764,852 + CSW01_18255 0.33 +0.5
764,861 + CSW01_18255 0.34 +0.9
764,898 - CSW01_18255 0.36 +0.8
764,903 - CSW01_18255 0.36 +0.4
764,966 - CSW01_18255 0.40 +0.6
764,971 - CSW01_18255 0.41 -0.4
764,973 - CSW01_18255 0.41 -0.9
765,043 + CSW01_18255 0.45 -0.6
765,070 - CSW01_18255 0.47 +0.8
765,155 + CSW01_18255 0.52 +0.6
765,175 + CSW01_18255 0.53 -0.2
765,175 + CSW01_18255 0.53 +0.0
765,175 + CSW01_18255 0.53 -1.5
765,269 + CSW01_18255 0.59 -0.9
765,320 + CSW01_18255 0.63 -0.4
765,429 + CSW01_18255 0.69 +0.4
765,436 + CSW01_18255 0.70 -0.7
765,593 + CSW01_18255 0.80 +1.0
765,635 - CSW01_18255 0.82 -0.7
765,707 + CSW01_18255 0.87 +0.8
765,715 - CSW01_18255 0.87 +0.5
765,715 - CSW01_18255 0.87 +0.9
765,830 + -0.4
765,830 + -0.8
765,830 + -1.1
765,830 + -0.3
765,830 + +0.1
765,830 + -0.0
765,830 + -0.4
765,838 - +0.4
765,838 - +0.0
765,838 - +0.6
765,847 + -0.0
765,925 + -0.1
765,925 + +1.1
765,933 - -0.2
765,941 - -0.3
765,993 + CSW01_18260 0.21 +0.4
765,993 + CSW01_18260 0.21 +0.1
766,001 - CSW01_18260 0.25 +1.5
766,001 - CSW01_18260 0.25 +0.0
766,001 - CSW01_18260 0.25 +1.7
766,008 + CSW01_18260 0.29 -0.1
766,014 + CSW01_18260 0.31 +0.8
766,027 + CSW01_18260 0.38 +0.3
766,049 + CSW01_18260 0.48 -0.7
766,138 + -1.3
766,146 - +0.1
766,152 - +1.9
766,152 - +0.4
766,157 - +0.4
766,255 + -0.3
766,255 + +1.7
766,273 - -0.5
766,375 + +0.7
766,455 + CSW01_18265 0.15 -1.1
766,550 + CSW01_18265 0.22 +0.1
766,558 - CSW01_18265 0.23 +0.4
766,558 - CSW01_18265 0.23 -1.5
766,596 + CSW01_18265 0.25 +1.2
766,630 + CSW01_18265 0.28 +0.4
766,686 + CSW01_18265 0.32 -0.8
766,700 + CSW01_18265 0.33 -0.4
766,714 + CSW01_18265 0.34 -0.3
766,719 + CSW01_18265 0.34 +0.2
766,771 - CSW01_18265 0.38 +0.6
766,839 - CSW01_18265 0.42 -0.3
766,897 - CSW01_18265 0.46 -2.0

Or see this region's nucleotide sequence