Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17980 and CSW01_17985 are separated by 295 nucleotides CSW01_17985 and CSW01_17990 are separated by 223 nucleotides CSW01_17990 and CSW01_17995 are separated by 8 nucleotides
CSW01_17980: CSW01_17980 - arginine ABC transporter ATP-binding protein ArtP, at 701,942 to 702,670
_17980
CSW01_17985: CSW01_17985 - tRNA-Cys, at 702,966 to 703,039
_17985
CSW01_17990: CSW01_17990 - ATPase RavA stimulator ViaA, at 703,263 to 704,708
_17990
CSW01_17995: CSW01_17995 - DUF3763 domain-containing protein, at 704,717 to 706,375
_17995
Position (kb) 703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 702.266 kb on + strand, within CSW01_17980 at 702.421 kb on + strand, within CSW01_17980 at 702.433 kb on + strand, within CSW01_17980 at 702.441 kb on - strand, within CSW01_17980 at 702.441 kb on - strand, within CSW01_17980 at 702.545 kb on + strand, within CSW01_17980 at 702.545 kb on + strand, within CSW01_17980 at 702.545 kb on + strand, within CSW01_17980 at 702.553 kb on - strand, within CSW01_17980 at 702.804 kb on + strand at 702.804 kb on + strand at 703.156 kb on + strand at 703.197 kb on - strand at 703.210 kb on + strand at 703.475 kb on + strand, within CSW01_17990 at 703.572 kb on + strand, within CSW01_17990 at 703.620 kb on - strand, within CSW01_17990 at 703.620 kb on - strand, within CSW01_17990 at 703.802 kb on + strand, within CSW01_17990 at 703.961 kb on - strand, within CSW01_17990 at 704.065 kb on - strand, within CSW01_17990 at 704.117 kb on - strand, within CSW01_17990 at 704.316 kb on - strand, within CSW01_17990 at 704.387 kb on + strand, within CSW01_17990 at 704.397 kb on - strand, within CSW01_17990 at 704.414 kb on - strand, within CSW01_17990 at 704.494 kb on - strand, within CSW01_17990 at 704.494 kb on - strand, within CSW01_17990 at 704.512 kb on + strand, within CSW01_17990 at 704.520 kb on - strand, within CSW01_17990 at 704.528 kb on - strand, within CSW01_17990 at 704.586 kb on - strand at 704.586 kb on - strand at 704.612 kb on + strand at 704.915 kb on - strand, within CSW01_17995 at 704.915 kb on - strand, within CSW01_17995 at 704.932 kb on - strand, within CSW01_17995 at 704.973 kb on - strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.092 kb on + strand, within CSW01_17995 at 705.100 kb on - strand, within CSW01_17995 at 705.100 kb on - strand, within CSW01_17995 at 705.100 kb on - strand, within CSW01_17995 at 705.100 kb on - strand, within CSW01_17995 at 705.100 kb on - strand, within CSW01_17995 at 705.100 kb on - strand, within CSW01_17995 at 705.170 kb on + strand, within CSW01_17995 at 705.339 kb on + strand, within CSW01_17995 at 705.349 kb on - strand, within CSW01_17995 at 705.375 kb on - strand, within CSW01_17995 at 705.409 kb on + strand, within CSW01_17995 at 705.417 kb on + strand, within CSW01_17995 at 705.417 kb on + strand, within CSW01_17995 at 705.425 kb on - strand, within CSW01_17995 at 705.435 kb on - strand, within CSW01_17995 at 705.474 kb on - strand, within CSW01_17995 at 705.474 kb on - strand, within CSW01_17995 at 705.488 kb on + strand, within CSW01_17995 at 705.622 kb on + strand, within CSW01_17995 at 705.653 kb on - strand, within CSW01_17995 at 705.685 kb on + strand, within CSW01_17995 at 705.693 kb on - strand, within CSW01_17995
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 702,266 + CSW01_17980 0.44 +0.9 702,421 + CSW01_17980 0.66 +1.1 702,433 + CSW01_17980 0.67 -0.2 702,441 - CSW01_17980 0.68 +0.4 702,441 - CSW01_17980 0.68 -0.3 702,545 + CSW01_17980 0.83 -0.0 702,545 + CSW01_17980 0.83 +1.1 702,545 + CSW01_17980 0.83 +0.6 702,553 - CSW01_17980 0.84 +0.3 702,804 + -0.3 702,804 + +0.3 703,156 + +0.5 703,197 - -1.3 703,210 + +1.1 703,475 + CSW01_17990 0.15 -0.2 703,572 + CSW01_17990 0.21 +1.8 703,620 - CSW01_17990 0.25 -1.3 703,620 - CSW01_17990 0.25 -0.3 703,802 + CSW01_17990 0.37 -0.2 703,961 - CSW01_17990 0.48 +0.6 704,065 - CSW01_17990 0.55 +1.1 704,117 - CSW01_17990 0.59 -0.4 704,316 - CSW01_17990 0.73 -0.2 704,387 + CSW01_17990 0.78 -1.7 704,397 - CSW01_17990 0.78 -0.1 704,414 - CSW01_17990 0.80 -2.2 704,494 - CSW01_17990 0.85 +1.1 704,494 - CSW01_17990 0.85 +0.0 704,512 + CSW01_17990 0.86 +1.7 704,520 - CSW01_17990 0.87 -0.3 704,528 - CSW01_17990 0.87 -0.9 704,586 - +0.9 704,586 - +0.4 704,612 + -1.9 704,915 - CSW01_17995 0.12 +0.9 704,915 - CSW01_17995 0.12 -0.7 704,932 - CSW01_17995 0.13 -0.6 704,973 - CSW01_17995 0.15 -0.7 705,092 + CSW01_17995 0.23 +0.4 705,092 + CSW01_17995 0.23 +0.4 705,092 + CSW01_17995 0.23 -0.8 705,092 + CSW01_17995 0.23 +0.5 705,092 + CSW01_17995 0.23 +0.5 705,092 + CSW01_17995 0.23 +0.1 705,092 + CSW01_17995 0.23 -0.1 705,092 + CSW01_17995 0.23 -1.5 705,100 - CSW01_17995 0.23 -0.7 705,100 - CSW01_17995 0.23 -0.1 705,100 - CSW01_17995 0.23 +0.4 705,100 - CSW01_17995 0.23 -0.1 705,100 - CSW01_17995 0.23 +0.9 705,100 - CSW01_17995 0.23 +2.3 705,170 + CSW01_17995 0.27 +0.4 705,339 + CSW01_17995 0.37 +0.3 705,349 - CSW01_17995 0.38 +0.4 705,375 - CSW01_17995 0.40 +0.7 705,409 + CSW01_17995 0.42 -0.9 705,417 + CSW01_17995 0.42 -0.3 705,417 + CSW01_17995 0.42 -0.2 705,425 - CSW01_17995 0.43 -2.0 705,435 - CSW01_17995 0.43 -0.4 705,474 - CSW01_17995 0.46 -3.5 705,474 - CSW01_17995 0.46 +0.7 705,488 + CSW01_17995 0.46 +0.4 705,622 + CSW01_17995 0.55 -0.3 705,653 - CSW01_17995 0.56 +0.3 705,685 + CSW01_17995 0.58 +0.2 705,693 - CSW01_17995 0.59 +0.6
Or see this region's nucleotide sequence