Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17435

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17430 and CSW01_17435 are separated by 92 nucleotidesCSW01_17435 and CSW01_17440 are separated by 115 nucleotides CSW01_17430: CSW01_17430 - NADH oxidase, at 576,775 to 578,478 _17430 CSW01_17435: CSW01_17435 - VOC family protein, at 578,571 to 578,951 _17435 CSW01_17440: CSW01_17440 - hemolysin, at 579,067 to 580,812 _17440 Position (kb) 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 577.693 kb on + strand, within CSW01_17430at 577.750 kb on + strand, within CSW01_17430at 577.822 kb on - strand, within CSW01_17430at 577.925 kb on - strand, within CSW01_17430at 578.054 kb on + strand, within CSW01_17430at 578.064 kb on + strand, within CSW01_17430at 578.086 kb on - strand, within CSW01_17430at 578.096 kb on + strand, within CSW01_17430at 578.096 kb on + strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.114 kb on - strand, within CSW01_17430at 578.119 kb on + strand, within CSW01_17430at 578.127 kb on - strand, within CSW01_17430at 578.156 kb on + strand, within CSW01_17430at 578.256 kb on - strand, within CSW01_17430at 578.328 kb on - strandat 578.328 kb on - strandat 578.420 kb on + strandat 578.447 kb on - strandat 578.447 kb on - strandat 578.472 kb on + strandat 578.472 kb on + strandat 578.472 kb on + strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.522 kb on - strandat 578.534 kb on - strandat 578.602 kb on + strandat 578.730 kb on - strand, within CSW01_17435at 578.747 kb on - strand, within CSW01_17435at 578.772 kb on - strand, within CSW01_17435at 579.012 kb on + strandat 579.055 kb on + strandat 579.091 kb on - strandat 579.109 kb on + strandat 579.174 kb on - strandat 579.259 kb on + strand, within CSW01_17440at 579.262 kb on - strand, within CSW01_17440at 579.287 kb on - strand, within CSW01_17440at 579.312 kb on - strand, within CSW01_17440at 579.362 kb on + strand, within CSW01_17440at 579.381 kb on - strand, within CSW01_17440at 579.381 kb on - strand, within CSW01_17440at 579.417 kb on - strand, within CSW01_17440at 579.469 kb on - strand, within CSW01_17440at 579.494 kb on + strand, within CSW01_17440at 579.562 kb on - strand, within CSW01_17440at 579.564 kb on + strand, within CSW01_17440at 579.573 kb on + strand, within CSW01_17440at 579.688 kb on + strand, within CSW01_17440at 579.734 kb on - strand, within CSW01_17440at 579.796 kb on + strand, within CSW01_17440at 579.951 kb on - strand, within CSW01_17440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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577,693 + CSW01_17430 0.54 +0.9
577,750 + CSW01_17430 0.57 -0.8
577,822 - CSW01_17430 0.61 -0.2
577,925 - CSW01_17430 0.67 +0.5
578,054 + CSW01_17430 0.75 -2.8
578,064 + CSW01_17430 0.76 +0.1
578,086 - CSW01_17430 0.77 +0.5
578,096 + CSW01_17430 0.78 +0.3
578,096 + CSW01_17430 0.78 +1.0
578,104 - CSW01_17430 0.78 -1.0
578,104 - CSW01_17430 0.78 +0.0
578,104 - CSW01_17430 0.78 -1.0
578,104 - CSW01_17430 0.78 -0.1
578,104 - CSW01_17430 0.78 +0.1
578,104 - CSW01_17430 0.78 -0.7
578,104 - CSW01_17430 0.78 +0.0
578,114 - CSW01_17430 0.79 +0.0
578,119 + CSW01_17430 0.79 +1.4
578,127 - CSW01_17430 0.79 +0.0
578,156 + CSW01_17430 0.81 +0.3
578,256 - CSW01_17430 0.87 +0.0
578,328 - +0.4
578,328 - -2.0
578,420 + -0.2
578,447 - -0.7
578,447 - +0.0
578,472 + -0.0
578,472 + +1.0
578,472 + +0.9
578,480 - -0.6
578,480 - -0.1
578,480 - -0.1
578,480 - -0.3
578,522 - -0.2
578,534 - +1.4
578,602 + -1.0
578,730 - CSW01_17435 0.42 +2.0
578,747 - CSW01_17435 0.46 +0.0
578,772 - CSW01_17435 0.53 -0.4
579,012 + -0.3
579,055 + +0.8
579,091 - -0.5
579,109 + -1.3
579,174 - +0.3
579,259 + CSW01_17440 0.11 -0.4
579,262 - CSW01_17440 0.11 -0.3
579,287 - CSW01_17440 0.13 +0.5
579,312 - CSW01_17440 0.14 -0.1
579,362 + CSW01_17440 0.17 +0.4
579,381 - CSW01_17440 0.18 +1.8
579,381 - CSW01_17440 0.18 +0.0
579,417 - CSW01_17440 0.20 -0.2
579,469 - CSW01_17440 0.23 +0.5
579,494 + CSW01_17440 0.24 -0.5
579,562 - CSW01_17440 0.28 -0.2
579,564 + CSW01_17440 0.28 +0.0
579,573 + CSW01_17440 0.29 +0.8
579,688 + CSW01_17440 0.36 -1.3
579,734 - CSW01_17440 0.38 -0.2
579,796 + CSW01_17440 0.42 +1.6
579,951 - CSW01_17440 0.51 +0.8

Or see this region's nucleotide sequence